(23 nodes) post-mRNA release spliceosomal complex network (Exophiala mesophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_01271	Sde2_N_Ubi domain-containing protein. (340 aa)
	PV10_06918	Uncharacterized protein. (496 aa)
	PV10_07001	C2H2-type domain-containing protein. (159 aa)
	PV10_07511	Uncharacterized protein. (328 aa)
	PV10_05810	Uncharacterized protein. (526 aa)
	PV10_04648	Pre-mRNA-splicing factor syf1. (862 aa)
	PV10_03245	RRM domain-containing protein. (427 aa)
	PV10_00642	Uncharacterized protein. (210 aa)
	PV10_08011	Pre-mRNA-splicing factor clf1. (675 aa)
	PV10_06919	Small nuclear ribonucleoprotein G. (81 aa)
	PV10_00137	Uncharacterized protein. (487 aa)
	PV10_00293	Pre-mRNA-splicing factor slt11. (374 aa)
	PV10_05868	Uncharacterized protein. (203 aa)
	PV10_06719	Uncharacterized protein. (356 aa)
	PV10_03744	Uncharacterized protein. (251 aa)
	PV10_03803	Uncharacterized protein. (250 aa)
	PV10_04262	Uncharacterized protein. (613 aa)
	PV10_05086	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (800 aa)
	PV10_08025	Uncharacterized protein. (705 aa)
	PV10_01497	G-patch domain-containing protein. (681 aa)
	PV10_06060	Uncharacterized protein. (428 aa)
	PV10_06419	Uncharacterized protein. (560 aa)
	PV10_02427	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1419 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV10_00137	PV10_00293	A0A0D1Y6D3	A0A0D1Y6Q8	Uncharacterized protein.	Pre-mRNA-splicing factor slt11.	0.408
PV10_00137	PV10_03803	A0A0D1Y6D3	A0A0D1ZCZ0	Uncharacterized protein.	Uncharacterized protein.	0.407
PV10_00137	PV10_04262	A0A0D1Y6D3	A0A0D1ZEB3	Uncharacterized protein.	Uncharacterized protein.	0.543
PV10_00137	PV10_04648	A0A0D1Y6D3	A0A0D1WVP4	Uncharacterized protein.	Pre-mRNA-splicing factor syf1.	0.408
PV10_00137	PV10_05086	A0A0D1Y6D3	A0A0D1ZGV2	Uncharacterized protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.423
PV10_00137	PV10_06919	A0A0D1Y6D3	A0A0D1XN41	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.583
PV10_00293	PV10_00137	A0A0D1Y6Q8	A0A0D1Y6D3	Pre-mRNA-splicing factor slt11.	Uncharacterized protein.	0.408
PV10_00293	PV10_00642	A0A0D1Y6Q8	A0A0D1X4V0	Pre-mRNA-splicing factor slt11.	Uncharacterized protein.	0.948
PV10_00293	PV10_01271	A0A0D1Y6Q8	A0A0D2AF65	Pre-mRNA-splicing factor slt11.	Sde2_N_Ubi domain-containing protein.	0.795
PV10_00293	PV10_01497	A0A0D1Y6Q8	A0A0D1ZUX5	Pre-mRNA-splicing factor slt11.	G-patch domain-containing protein.	0.860
PV10_00293	PV10_02427	A0A0D1Y6Q8	A0A0D2A6Q0	Pre-mRNA-splicing factor slt11.	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.	0.998
PV10_00293	PV10_03245	A0A0D1Y6Q8	A0A0D1X1H6	Pre-mRNA-splicing factor slt11.	RRM domain-containing protein.	0.408
PV10_00293	PV10_03744	A0A0D1Y6Q8	A0A0D1ZCN7	Pre-mRNA-splicing factor slt11.	Uncharacterized protein.	0.999
PV10_00293	PV10_03803	A0A0D1Y6Q8	A0A0D1ZCZ0	Pre-mRNA-splicing factor slt11.	Uncharacterized protein.	0.982
PV10_00293	PV10_04648	A0A0D1Y6Q8	A0A0D1WVP4	Pre-mRNA-splicing factor slt11.	Pre-mRNA-splicing factor syf1.	0.999
PV10_00293	PV10_05086	A0A0D1Y6Q8	A0A0D1ZGV2	Pre-mRNA-splicing factor slt11.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.918
PV10_00293	PV10_06060	A0A0D1Y6Q8	A0A0D1ZXL0	Pre-mRNA-splicing factor slt11.	Uncharacterized protein.	0.990
PV10_00293	PV10_06919	A0A0D1Y6Q8	A0A0D1XN41	Pre-mRNA-splicing factor slt11.	Small nuclear ribonucleoprotein G.	0.946
PV10_00293	PV10_07001	A0A0D1Y6Q8	A0A0D1WKV7	Pre-mRNA-splicing factor slt11.	C2H2-type domain-containing protein.	0.739
PV10_00293	PV10_07511	A0A0D1Y6Q8	A0A0D1WMD7	Pre-mRNA-splicing factor slt11.	Uncharacterized protein.	0.968