20 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_08948	Uncharacterized protein. (1891 aa)
	PV10_06985	Uncharacterized protein. (360 aa)
	PV10_03876	Uncharacterized protein. (353 aa)
	B0A52_02906	Histone H3; Belongs to the histone H3 family. (136 aa)
	PV10_02312	SWIB domain-containing protein. (274 aa)
	PV10_06445	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1218 aa)
	PV10_05636	Histone H3-like centromeric protein cnp1. (158 aa)
	PV10_05370	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (297 aa)
	PV10_06381	DNA-directed RNA polymerase. (196 aa)
	PV10_05633	RNA_pol_L_2 domain-containing protein. (129 aa)
	PV10_06117	Uncharacterized protein. (478 aa)
	B0A52_02609	S1 domain-containing protein. (169 aa)
	PV10_08396	Uncharacterized protein. (969 aa)
	B0A52_01643	Uncharacterized protein. (152 aa)
	PV10_01009	Uncharacterized protein. (1209 aa)
	PV10_08687	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (460 aa)
	PV10_09129	Uncharacterized protein. (815 aa)
	PV10_01601	Uncharacterized protein. (569 aa)
	PV10_00274	Plus3 domain-containing protein. (606 aa)
	PV10_04777	B-block_TFIIIC domain-containing protein. (1963 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_01643	B0A52_02609	A0A0D1Z529	A0A0D1XUD0	Uncharacterized protein.	S1 domain-containing protein.	0.999
B0A52_01643	B0A52_02906	A0A0D1Z529	A0A0D1ZJW3	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.915
B0A52_01643	PV10_00274	A0A0D1Z529	A0A0D1Y6N2	Uncharacterized protein.	Plus3 domain-containing protein.	0.909
B0A52_01643	PV10_01009	A0A0D1Z529	A0A0D1ZRJ8	Uncharacterized protein.	Uncharacterized protein.	0.663
B0A52_01643	PV10_03876	A0A0D1Z529	A0A0D1ZD54	Uncharacterized protein.	Uncharacterized protein.	0.622
B0A52_01643	PV10_05370	A0A0D1Z529	A0A0D1XRL2	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.960
B0A52_01643	PV10_05633	A0A0D1Z529	A0A0D1ZWA0	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
B0A52_01643	PV10_05636	A0A0D1Z529	A0A0D1XSG5	Uncharacterized protein.	Histone H3-like centromeric protein cnp1.	0.915
B0A52_01643	PV10_06117	A0A0D1Z529	A0A0D1ZXP7	Uncharacterized protein.	Uncharacterized protein.	0.999
B0A52_01643	PV10_06381	A0A0D1Z529	A0A0D1WRU2	Uncharacterized protein.	DNA-directed RNA polymerase.	0.997
B0A52_01643	PV10_06445	A0A0D1Z529	A0A0D1ZDF4	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B0A52_01643	PV10_06985	A0A0D1Z529	A0A0D1Z6S7	Uncharacterized protein.	Uncharacterized protein.	0.631
B0A52_01643	PV10_08396	A0A0D1Z529	A0A0D1Z496	Uncharacterized protein.	Uncharacterized protein.	0.633
B0A52_02609	B0A52_01643	A0A0D1XUD0	A0A0D1Z529	S1 domain-containing protein.	Uncharacterized protein.	0.999
B0A52_02609	B0A52_02906	A0A0D1XUD0	A0A0D1ZJW3	S1 domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.903
B0A52_02609	PV10_00274	A0A0D1XUD0	A0A0D1Y6N2	S1 domain-containing protein.	Plus3 domain-containing protein.	0.909
B0A52_02609	PV10_05633	A0A0D1XUD0	A0A0D1ZWA0	S1 domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.503
B0A52_02609	PV10_05636	A0A0D1XUD0	A0A0D1XSG5	S1 domain-containing protein.	Histone H3-like centromeric protein cnp1.	0.903
B0A52_02609	PV10_06117	A0A0D1XUD0	A0A0D1ZXP7	S1 domain-containing protein.	Uncharacterized protein.	0.401
B0A52_02609	PV10_06445	A0A0D1XUD0	A0A0D1ZDF4	S1 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.901