58 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_03578	Pre-mRNA-processing-splicing factor 8, variant. (2356 aa)
	PV10_03505	Sm domain-containing protein. (140 aa)
	PV10_08258	Matrin-type domain-containing protein. (238 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	PV10_08030	Uncharacterized protein. (209 aa)
	PV10_08998	Uncharacterized protein. (543 aa)
	B0A52_09991	Sm domain-containing protein. (223 aa)
	B0A52_01428	Small nuclear ribonucleoprotein Sm D2. (114 aa)
	PV10_04877	Uncharacterized protein. (1753 aa)
	PV10_04484	PAT1 domain-containing protein. (808 aa)
	PV10_06548	Uncharacterized protein. (983 aa)
	PV10_03993	GYF domain-containing protein. (480 aa)
	PV10_03803	Uncharacterized protein. (250 aa)
	PV10_05826	WD_REPEATS_REGION domain-containing protein. (335 aa)
	PV10_07460	Uncharacterized protein. (2229 aa)
	PV10_07570	Uncharacterized protein. (177 aa)
	PV10_08116	Uncharacterized protein. (770 aa)
	PV10_08012	Nop domain-containing protein. (602 aa)
	PV10_01126	Uncharacterized protein. (386 aa)
	PV10_00383	Uncharacterized protein. (89 aa)
	PV10_02944	PSP domain-containing protein. (576 aa)
	PV10_02680	Uncharacterized protein. (578 aa)
	PV10_02508	C2H2-type domain-containing protein. (216 aa)
	PV10_02013	Uncharacterized protein. (560 aa)
	B0A52_09139	RRM domain-containing protein. (116 aa)
	B0A52_08158	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	PV10_04520	RRM domain-containing protein. (401 aa)
	PV10_06286	WD_REPEATS_REGION domain-containing protein. (519 aa)
	PV10_05915	RRM domain-containing protein. (279 aa)
	B0A52_05749	PHD finger-like domain-containing protein 5A. (109 aa)
	PV10_07318	Uncharacterized protein. (768 aa)
	PV10_07304	Uncharacterized protein. (380 aa)
	PV10_08639	RRM domain-containing protein. (405 aa)
	PV10_03701	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
	PV10_06654	Tr-type G domain-containing protein. (982 aa)
	PV10_05389	Uncharacterized protein. (336 aa)
	PV10_07725	Uncharacterized protein. (479 aa)
	PV10_07327	Uncharacterized protein. (421 aa)
	PV10_06919	Small nuclear ribonucleoprotein G. (81 aa)
	PV10_01325	Uncharacterized protein. (379 aa)
	PV10_01165	Uncharacterized protein. (766 aa)
	PV10_00182	Uncharacterized protein. (1287 aa)
	B0A52_07148	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (84 aa)
	PV10_02820	Uncharacterized protein. (311 aa)
	B0A52_05389	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	PV10_01386	Pre-mRNA-splicing factor rse1. (1211 aa)
	PV10_07861	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (132 aa)
	PV10_05785	Uncharacterized protein. (155 aa)
	PV10_04646	Uncharacterized protein. (252 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	PV10_02697	CID domain-containing protein. (859 aa)
	PV10_03028	RRM domain-containing protein. (200 aa)
	PV10_00085	SF3b1 domain-containing protein. (1213 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (188 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (127 aa)
	PV10_00555	Uncharacterized protein. (291 aa)
	PV10_00881	Uncharacterized protein. (284 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_01428	B0A52_05389	A0A0D1ZHQ3	A0A0D1WX48	Small nuclear ribonucleoprotein Sm D2.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.969
B0A52_01428	B0A52_05749	A0A0D1ZHQ3	A0A0D1WNH2	Small nuclear ribonucleoprotein Sm D2.	PHD finger-like domain-containing protein 5A.	0.986
B0A52_01428	B0A52_07148	A0A0D1ZHQ3	A0A0D1X1M3	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
B0A52_01428	B0A52_08158	A0A0D1ZHQ3	A0A0D1WWG2	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
B0A52_01428	B0A52_09139	A0A0D1ZHQ3	A0A0D1XY64	Small nuclear ribonucleoprotein Sm D2.	RRM domain-containing protein.	0.948
B0A52_01428	B0A52_09991	A0A0D1ZHQ3	A0A0D1ZJ13	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.998
B0A52_01428	LSM1	A0A0D1ZHQ3	A0A0D2ADZ2	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.608
B0A52_01428	LSM3	A0A0D1ZHQ3	A0A0D2A4R8	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
B0A52_01428	LSM4	A0A0D1ZHQ3	A0A0D2AE60	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
B0A52_01428	LSM5	A0A0D1ZHQ3	A0A0D1X0N3	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.991
B0A52_01428	LSM8	A0A0D1ZHQ3	A0A0D1ZP58	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
B0A52_01428	PV10_00085	A0A0D1ZHQ3	A0A0D2AB73	Small nuclear ribonucleoprotein Sm D2.	SF3b1 domain-containing protein.	0.982
B0A52_01428	PV10_00383	A0A0D1ZHQ3	A0A0D1Y775	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.994
B0A52_01428	PV10_00555	A0A0D1ZHQ3	A0A0D1ZRY3	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.995
B0A52_01428	PV10_00881	A0A0D1ZHQ3	A0A0D1ZR62	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.608
B0A52_01428	PV10_01126	A0A0D1ZHQ3	A0A0D1Y9M5	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.664
B0A52_01428	PV10_01325	A0A0D1ZHQ3	A0A0D1X6Y2	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.989
B0A52_01428	PV10_01386	A0A0D1ZHQ3	A0A0D1ZUN6	Small nuclear ribonucleoprotein Sm D2.	Pre-mRNA-splicing factor rse1.	0.981
B0A52_01428	PV10_02013	A0A0D1ZHQ3	A0A0D1Y129	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.723
B0A52_01428	PV10_02508	A0A0D1ZHQ3	A0A0D1Y2G2	Small nuclear ribonucleoprotein Sm D2.	C2H2-type domain-containing protein.	0.930