36 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1101 aa)
	PV10_03474	Uncharacterized protein. (457 aa)
	PV10_04825	CBF domain-containing protein. (1026 aa)
	PV10_04245	WD_REPEATS_REGION domain-containing protein. (632 aa)
	B0A52_05115	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (146 aa)
	PV10_07293	Uncharacterized protein. (1034 aa)
	PV10_07749	WD_REPEATS_REGION domain-containing protein. (973 aa)
	PV10_08687	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (460 aa)
	PV10_09012	RRM domain-containing protein. (321 aa)
	PV10_01591	Zn(2)-C6 fungal-type domain-containing protein. (757 aa)
	B0A52_09227	S4 RNA-binding domain-containing protein. (188 aa)
	PV10_04861	F-box domain-containing protein. (1244 aa)
	PV10_06422	Uncharacterized protein. (577 aa)
	PV10_07560	Uncharacterized protein. (906 aa)
	PV10_06894	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (526 aa)
	PV10_08677	RRM domain-containing protein. (604 aa)
	PV10_08401	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (762 aa)
	PV10_09023	Fungal_trans domain-containing protein. (842 aa)
	PV10_09001	Zn(2)-C6 fungal-type domain-containing protein. (728 aa)
	PV10_01007	CBF domain-containing protein. (290 aa)
	PV10_00534	RNA helicase. (629 aa)
	PV10_00469	Uncharacterized protein. (384 aa)
	PV10_03548	Uncharacterized protein. (705 aa)
	PV10_02846	RNA helicase. (635 aa)
	PV10_06782	RING-type domain-containing protein. (702 aa)
	PV10_09135	DUF2235 domain-containing protein. (500 aa)
	PV10_03074	NUC153 domain-containing protein. (728 aa)
	PV10_08688	Zn(2)-C6 fungal-type domain-containing protein. (754 aa)
	PV10_01172	Uncharacterized protein. (678 aa)
	PV10_01331	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (315 aa)
	PV10_05630	Uncharacterized protein. (302 aa)
	PV10_00501	U3 small nucleolar RNA-associated protein 22. (1140 aa)
	PV10_01510	Utp12 domain-containing protein. (894 aa)
	PV10_09194	Brix domain-containing protein. (296 aa)
	PV10_09137	Uncharacterized protein; Belongs to the DEAD box helicase family. (591 aa)
	PV10_07365	18S rRNA biogenesis protein RCL1. (405 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_05115	B0A52_09227	A0A0D1Z9P8	A0A0D1Y485	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	S4 RNA-binding domain-containing protein.	0.994
B0A52_05115	NAT10	A0A0D1Z9P8	A0A0D1ZY24	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.947
B0A52_05115	PV10_00469	A0A0D1Z9P8	A0A0D1X4D2	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.977
B0A52_05115	PV10_00501	A0A0D1Z9P8	A0A0D2ACI2	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	U3 small nucleolar RNA-associated protein 22.	0.974
B0A52_05115	PV10_01007	A0A0D1Z9P8	A0A0D1X610	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	CBF domain-containing protein.	0.976
B0A52_05115	PV10_01331	A0A0D1Z9P8	A0A0D1ZSR8	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.998
B0A52_05115	PV10_01510	A0A0D1Z9P8	A0A0D2AFV7	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Utp12 domain-containing protein.	0.974
B0A52_05115	PV10_03074	A0A0D1Z9P8	A0A0D1ZN82	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	NUC153 domain-containing protein.	0.939
B0A52_05115	PV10_03474	A0A0D1Z9P8	A0A0D1ZMJ6	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.976
B0A52_05115	PV10_04245	A0A0D1Z9P8	A0A0D1ZE97	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	WD_REPEATS_REGION domain-containing protein.	0.973
B0A52_05115	PV10_06422	A0A0D1Z9P8	A0A0D1XUP7	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.949
B0A52_05115	PV10_07293	A0A0D1Z9P8	A0A0D1Z7L8	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.977
B0A52_05115	PV10_07365	A0A0D1Z9P8	A0A0D1WM32	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	18S rRNA biogenesis protein RCL1.	0.977
B0A52_05115	PV10_07560	A0A0D1Z9P8	A0A0D1XQ45	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.969
B0A52_05115	PV10_07749	A0A0D1Z9P8	A0A0D1Z6H2	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	WD_REPEATS_REGION domain-containing protein.	0.977
B0A52_05115	PV10_08401	A0A0D1Z9P8	A0A0D1XKM3	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.977
B0A52_05115	PV10_09137	A0A0D1Z9P8	A0A0D1WHC8	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.695
B0A52_05115	PV10_09194	A0A0D1Z9P8	A0A0D1ZMQ7	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	Brix domain-containing protein.	0.977
B0A52_09227	B0A52_05115	A0A0D1Y485	A0A0D1Z9P8	S4 RNA-binding domain-containing protein.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.994
B0A52_09227	NAT10	A0A0D1Y485	A0A0D1ZY24	S4 RNA-binding domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.959