(11 nodes) Catalytic step 2 spliceosome network (Exophiala mesophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_01740	RRM domain-containing protein. (155 aa)
	PV10_04648	Pre-mRNA-splicing factor syf1. (862 aa)
	PV10_02022	WD_REPEATS_REGION domain-containing protein. (573 aa)
	PV10_08011	Pre-mRNA-splicing factor clf1. (675 aa)
	PV10_06654	Tr-type G domain-containing protein. (982 aa)
	PV10_03997	WD_REPEATS_REGION domain-containing protein. (365 aa)
	PV10_00293	Pre-mRNA-splicing factor slt11. (374 aa)
	PV10_02135	Uncharacterized protein. (618 aa)
	PV10_00404	Uncharacterized protein. (357 aa)
	PV10_06060	Uncharacterized protein. (428 aa)
	PV10_03573	Uncharacterized protein. (544 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV10_00293	PV10_00404	A0A0D1Y6Q8	A0A0D1ZRK1	Pre-mRNA-splicing factor slt11.	Uncharacterized protein.	0.620
PV10_00293	PV10_01740	A0A0D1Y6Q8	A0A0D1ZVP5	Pre-mRNA-splicing factor slt11.	RRM domain-containing protein.	0.997
PV10_00293	PV10_02022	A0A0D1Y6Q8	A0A0D1WXS0	Pre-mRNA-splicing factor slt11.	WD_REPEATS_REGION domain-containing protein.	0.990
PV10_00293	PV10_02135	A0A0D1Y6Q8	A0A0D1ZIC8	Pre-mRNA-splicing factor slt11.	Uncharacterized protein.	0.656
PV10_00293	PV10_04648	A0A0D1Y6Q8	A0A0D1WVP4	Pre-mRNA-splicing factor slt11.	Pre-mRNA-splicing factor syf1.	0.999
PV10_00293	PV10_06060	A0A0D1Y6Q8	A0A0D1ZXL0	Pre-mRNA-splicing factor slt11.	Uncharacterized protein.	0.990
PV10_00293	PV10_06654	A0A0D1Y6Q8	A0A0D1XV95	Pre-mRNA-splicing factor slt11.	Tr-type G domain-containing protein.	0.988
PV10_00293	PV10_08011	A0A0D1Y6Q8	A0A0D1XJE7	Pre-mRNA-splicing factor slt11.	Pre-mRNA-splicing factor clf1.	0.999
PV10_00404	PV10_00293	A0A0D1ZRK1	A0A0D1Y6Q8	Uncharacterized protein.	Pre-mRNA-splicing factor slt11.	0.620
PV10_00404	PV10_01740	A0A0D1ZRK1	A0A0D1ZVP5	Uncharacterized protein.	RRM domain-containing protein.	0.640
PV10_00404	PV10_02022	A0A0D1ZRK1	A0A0D1WXS0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.753
PV10_00404	PV10_02135	A0A0D1ZRK1	A0A0D1ZIC8	Uncharacterized protein.	Uncharacterized protein.	0.636
PV10_00404	PV10_04648	A0A0D1ZRK1	A0A0D1WVP4	Uncharacterized protein.	Pre-mRNA-splicing factor syf1.	0.629
PV10_00404	PV10_06654	A0A0D1ZRK1	A0A0D1XV95	Uncharacterized protein.	Tr-type G domain-containing protein.	0.717
PV10_00404	PV10_08011	A0A0D1ZRK1	A0A0D1XJE7	Uncharacterized protein.	Pre-mRNA-splicing factor clf1.	0.620
PV10_01740	PV10_00293	A0A0D1ZVP5	A0A0D1Y6Q8	RRM domain-containing protein.	Pre-mRNA-splicing factor slt11.	0.997
PV10_01740	PV10_00404	A0A0D1ZVP5	A0A0D1ZRK1	RRM domain-containing protein.	Uncharacterized protein.	0.640
PV10_01740	PV10_02022	A0A0D1ZVP5	A0A0D1WXS0	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.897
PV10_01740	PV10_02135	A0A0D1ZVP5	A0A0D1ZIC8	RRM domain-containing protein.	Uncharacterized protein.	0.861
PV10_01740	PV10_03997	A0A0D1ZVP5	A0A0D1XWW5	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.416