(22 nodes) post-mRNA release spliceosomal complex network (Exophiala mesophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_05086	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (800 aa)
	PV10_04262	Uncharacterized protein. (613 aa)
	PV10_06719	Uncharacterized protein. (356 aa)
	PV10_06226	Uncharacterized protein. (631 aa)
	PV10_05868	Uncharacterized protein. (203 aa)
	PV10_06892	Uncharacterized protein. (311 aa)
	PV10_08855	WD_REPEATS_REGION domain-containing protein. (360 aa)
	PV10_00137	Uncharacterized protein. (487 aa)
	PV10_06525	Uncharacterized protein. (571 aa)
	PV10_08025	Uncharacterized protein. (705 aa)
	PV10_01497	G-patch domain-containing protein. (681 aa)
	PV10_06419	Uncharacterized protein. (560 aa)
	PV10_01271	Sde2_N_Ubi domain-containing protein. (340 aa)
	PV10_05797	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (165 aa)
	PV10_00325	Uncharacterized protein. (353 aa)
	PV10_03245	RRM domain-containing protein. (427 aa)
	PV10_04648	Pre-mRNA-splicing factor syf1. (862 aa)
	PV10_04109	Pre-mRNA-processing protein 45. (585 aa)
	PV10_05810	Uncharacterized protein. (526 aa)
	PV10_07511	Uncharacterized protein. (328 aa)
	PV10_07001	C2H2-type domain-containing protein. (159 aa)
	PV10_06918	Uncharacterized protein. (496 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV10_00137	PV10_04109	A0A0D1Y6D3	A0A0D1WUC2	Uncharacterized protein.	Pre-mRNA-processing protein 45.	0.400
PV10_00137	PV10_04262	A0A0D1Y6D3	A0A0D1ZEB3	Uncharacterized protein.	Uncharacterized protein.	0.543
PV10_00137	PV10_04648	A0A0D1Y6D3	A0A0D1WVP4	Uncharacterized protein.	Pre-mRNA-splicing factor syf1.	0.408
PV10_00137	PV10_05086	A0A0D1Y6D3	A0A0D1ZGV2	Uncharacterized protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.423
PV10_01271	PV10_01497	A0A0D2AF65	A0A0D1ZUX5	Sde2_N_Ubi domain-containing protein.	G-patch domain-containing protein.	0.660
PV10_01271	PV10_04109	A0A0D2AF65	A0A0D1WUC2	Sde2_N_Ubi domain-containing protein.	Pre-mRNA-processing protein 45.	0.727
PV10_01271	PV10_04648	A0A0D2AF65	A0A0D1WVP4	Sde2_N_Ubi domain-containing protein.	Pre-mRNA-splicing factor syf1.	0.727
PV10_01271	PV10_05086	A0A0D2AF65	A0A0D1ZGV2	Sde2_N_Ubi domain-containing protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.644
PV10_01271	PV10_05797	A0A0D2AF65	A0A0D1XSX0	Sde2_N_Ubi domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.862
PV10_01271	PV10_05868	A0A0D2AF65	A0A0D1Z9B1	Sde2_N_Ubi domain-containing protein.	Uncharacterized protein.	0.759
PV10_01271	PV10_07001	A0A0D2AF65	A0A0D1WKV7	Sde2_N_Ubi domain-containing protein.	C2H2-type domain-containing protein.	0.587
PV10_01271	PV10_07511	A0A0D2AF65	A0A0D1WMD7	Sde2_N_Ubi domain-containing protein.	Uncharacterized protein.	0.924
PV10_01271	PV10_08025	A0A0D2AF65	A0A0D1ZNG1	Sde2_N_Ubi domain-containing protein.	Uncharacterized protein.	0.665
PV10_01271	PV10_08855	A0A0D2AF65	A0A0D1Z3D8	Sde2_N_Ubi domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.799
PV10_01497	PV10_01271	A0A0D1ZUX5	A0A0D2AF65	G-patch domain-containing protein.	Sde2_N_Ubi domain-containing protein.	0.660
PV10_01497	PV10_04109	A0A0D1ZUX5	A0A0D1WUC2	G-patch domain-containing protein.	Pre-mRNA-processing protein 45.	0.921
PV10_01497	PV10_04262	A0A0D1ZUX5	A0A0D1ZEB3	G-patch domain-containing protein.	Uncharacterized protein.	0.415
PV10_01497	PV10_04648	A0A0D1ZUX5	A0A0D1WVP4	G-patch domain-containing protein.	Pre-mRNA-splicing factor syf1.	0.916
PV10_01497	PV10_05086	A0A0D1ZUX5	A0A0D1ZGV2	G-patch domain-containing protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.995
PV10_01497	PV10_05797	A0A0D1ZUX5	A0A0D1XSX0	G-patch domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.707