(13 nodes) Tyrosine-specific protein phosphatases domain network (Exophiala mesophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_05504	Uncharacterized protein. (408 aa)
	PV10_05913	TYR_PHOSPHATASE_2 domain-containing protein. (414 aa)
	PV10_01684	Uncharacterized protein. (327 aa)
	PV10_01393	TYR_PHOSPHATASE_2 domain-containing protein. (650 aa)
	PV10_02390	Uncharacterized protein. (539 aa)
	PV10_05313	Uncharacterized protein. (268 aa)
	PV10_07347	Uncharacterized protein. (883 aa)
	PV10_09045	Uncharacterized protein. (815 aa)
	PV10_01864	Uncharacterized protein. (219 aa)
	PV10_02035	TYR_PHOSPHATASE_2 domain-containing protein. (297 aa)
	PV10_08493	Uncharacterized protein. (545 aa)
	PV10_00748	TYR_PHOSPHATASE_2 domain-containing protein. (634 aa)
	PV10_05104	Uncharacterized protein. (687 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV10_01393	PV10_01684	A0A0D1ZSX9	A0A0D1ZVJ4	TYR_PHOSPHATASE_2 domain-containing protein.	Uncharacterized protein.	0.503
PV10_01393	PV10_01864	A0A0D1ZSX9	A0A0D1YBY0	TYR_PHOSPHATASE_2 domain-containing protein.	Uncharacterized protein.	0.503
PV10_01393	PV10_05104	A0A0D1ZSX9	A0A0D1WX17	TYR_PHOSPHATASE_2 domain-containing protein.	Uncharacterized protein.	0.503
PV10_01393	PV10_05504	A0A0D1ZSX9	A0A0D1WPC0	TYR_PHOSPHATASE_2 domain-containing protein.	Uncharacterized protein.	0.527
PV10_01393	PV10_09045	A0A0D1ZSX9	A0A0D1Z2I1	TYR_PHOSPHATASE_2 domain-containing protein.	Uncharacterized protein.	0.510
PV10_01684	PV10_01393	A0A0D1ZVJ4	A0A0D1ZSX9	Uncharacterized protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.503
PV10_01684	PV10_02390	A0A0D1ZVJ4	A0A0D1ZJ62	Uncharacterized protein.	Uncharacterized protein.	0.589
PV10_01684	PV10_07347	A0A0D1ZVJ4	A0A0D1Z5E2	Uncharacterized protein.	Uncharacterized protein.	0.407
PV10_01864	PV10_01393	A0A0D1YBY0	A0A0D1ZSX9	Uncharacterized protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.503
PV10_01864	PV10_02390	A0A0D1YBY0	A0A0D1ZJ62	Uncharacterized protein.	Uncharacterized protein.	0.589
PV10_01864	PV10_07347	A0A0D1YBY0	A0A0D1Z5E2	Uncharacterized protein.	Uncharacterized protein.	0.407
PV10_02390	PV10_01684	A0A0D1ZJ62	A0A0D1ZVJ4	Uncharacterized protein.	Uncharacterized protein.	0.589
PV10_02390	PV10_01864	A0A0D1ZJ62	A0A0D1YBY0	Uncharacterized protein.	Uncharacterized protein.	0.589
PV10_02390	PV10_05104	A0A0D1ZJ62	A0A0D1WX17	Uncharacterized protein.	Uncharacterized protein.	0.589
PV10_02390	PV10_05504	A0A0D1ZJ62	A0A0D1WPC0	Uncharacterized protein.	Uncharacterized protein.	0.589
PV10_02390	PV10_07347	A0A0D1ZJ62	A0A0D1Z5E2	Uncharacterized protein.	Uncharacterized protein.	0.847
PV10_02390	PV10_09045	A0A0D1ZJ62	A0A0D1Z2I1	Uncharacterized protein.	Uncharacterized protein.	0.644
PV10_05104	PV10_01393	A0A0D1WX17	A0A0D1ZSX9	Uncharacterized protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.503
PV10_05104	PV10_02390	A0A0D1WX17	A0A0D1ZJ62	Uncharacterized protein.	Uncharacterized protein.	0.589
PV10_05104	PV10_07347	A0A0D1WX17	A0A0D1Z5E2	Uncharacterized protein.	Uncharacterized protein.	0.407