14 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	B0A52_10116	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	PV10_07861	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (132 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (127 aa)
	B0A52_09991	Sm domain-containing protein. (223 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	PV10_03505	Sm domain-containing protein. (140 aa)
	B0A52_01428	Small nuclear ribonucleoprotein Sm D2. (114 aa)
	PV10_06919	Small nuclear ribonucleoprotein G. (81 aa)
	B0A52_07148	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (84 aa)
	PV10_02433	Sm domain-containing protein. (113 aa)
	B0A52_08158	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (188 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_01428	B0A52_07148	A0A0D1ZHQ3	A0A0D1X1M3	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
B0A52_01428	B0A52_08158	A0A0D1ZHQ3	A0A0D1WWG2	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
B0A52_01428	B0A52_09991	A0A0D1ZHQ3	A0A0D1ZJ13	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.998
B0A52_01428	B0A52_10116	A0A0D1ZHQ3	A0A0D2A2E0	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
B0A52_01428	LSM1	A0A0D1ZHQ3	A0A0D2ADZ2	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.608
B0A52_01428	LSM3	A0A0D1ZHQ3	A0A0D2A4R8	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
B0A52_01428	LSM4	A0A0D1ZHQ3	A0A0D2AE60	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
B0A52_01428	LSM5	A0A0D1ZHQ3	A0A0D1X0N3	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.991
B0A52_01428	LSM8	A0A0D1ZHQ3	A0A0D1ZP58	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
B0A52_01428	PV10_02433	A0A0D1ZHQ3	A0A0D1WYW9	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.956
B0A52_01428	PV10_03505	A0A0D1ZHQ3	A0A0D1ZPM0	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.995
B0A52_01428	PV10_06919	A0A0D1ZHQ3	A0A0D1XN41	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
B0A52_01428	PV10_07861	A0A0D1ZHQ3	A0A0D1ZUV8	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
B0A52_07148	B0A52_01428	A0A0D1X1M3	A0A0D1ZHQ3	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.999
B0A52_07148	B0A52_08158	A0A0D1X1M3	A0A0D1WWG2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.994
B0A52_07148	B0A52_09991	A0A0D1X1M3	A0A0D1ZJ13	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.967
B0A52_07148	B0A52_10116	A0A0D1X1M3	A0A0D2A2E0	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.985
B0A52_07148	LSM1	A0A0D1X1M3	A0A0D2ADZ2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.969
B0A52_07148	LSM3	A0A0D1X1M3	A0A0D2A4R8	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
B0A52_07148	LSM4	A0A0D1X1M3	A0A0D2AE60	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999