(73 nodes) Helicase superfamily 1/2, ATP-binding domain network (Exophiala mesophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_08948	Uncharacterized protein. (1891 aa)
	PV10_00133	Uncharacterized protein. (804 aa)
	PV10_03067	ATP-dependent RNA helicase ded1, variant; Belongs to the DEAD box helicase family. (684 aa)
	PV10_02015	Pre-mRNA-splicing ATP-dependent RNA helicase prp28. (809 aa)
	PV10_04918	Uncharacterized protein. (1151 aa)
	PV10_04719	Uncharacterized protein. (752 aa)
	PV10_04584	Uncharacterized protein. (1346 aa)
	PV10_04448	Uncharacterized protein. (1153 aa)
	PV10_04246	Uncharacterized protein. (611 aa)
	PV10_05874	ATP-dependent RNA helicase sub2. (440 aa)
	PV10_01824	Uncharacterized protein. (1197 aa)
	PV10_05344	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (513 aa)
	PV10_07898	Uncharacterized protein; Belongs to the DEAD box helicase family. (516 aa)
	B0A52_06108	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family. (399 aa)
	PV10_07679	ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family. (468 aa)
	PV10_01096	Uncharacterized protein. (832 aa)
	PV10_01602	Uncharacterized protein. (658 aa)
	PV10_00895	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1411 aa)
	PV10_01172	Uncharacterized protein. (678 aa)
	PV10_02506	Uncharacterized protein; Belongs to the DEAD box helicase family. (676 aa)
	PV10_04977	Uncharacterized protein; Belongs to the DEAD box helicase family. (806 aa)
	PV10_05086	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (800 aa)
	PV10_04133	Uncharacterized protein. (1099 aa)
	PV10_04872	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1536 aa)
	PV10_03810	Uncharacterized protein. (1152 aa)
	PV10_06736	Uncharacterized protein. (846 aa)
	PV10_06657	Uncharacterized protein. (990 aa)
	PV10_04166	ATP-dependent RNA helicase DBP10. (954 aa)
	PV10_06476	Uncharacterized protein. (1040 aa)
	PV10_06278	Uncharacterized protein. (1097 aa)
	PV10_06158	Uncharacterized protein. (964 aa)
	PV10_07879	Uncharacterized protein. (670 aa)
	PV10_07651	Uncharacterized protein; Belongs to the DEAD box helicase family. (738 aa)
	PV10_07460	Uncharacterized protein. (2229 aa)
	PV10_05343	Uncharacterized protein. (589 aa)
	PV10_07458	Uncharacterized protein. (2044 aa)
	PV10_07414	Uncharacterized protein. (1203 aa)
	PV10_07208	ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family. (429 aa)
	PV10_08419	Uncharacterized protein; Belongs to the DEAD box helicase family. (541 aa)
	PV10_08223	Uncharacterized protein. (1189 aa)
	PV10_08721	Uncharacterized protein; Belongs to the DEAD box helicase family. (781 aa)
	PV10_08001	Uncharacterized protein. (1540 aa)
	PV10_03580	Uncharacterized protein. (1124 aa)
	PV10_03222	Uncharacterized protein. (978 aa)
	PV10_02986	Uncharacterized protein. (988 aa)
	PV10_04906	RNA helicase. (857 aa)
	PV10_06521	Uncharacterized protein. (1608 aa)
	PV10_06115	Uncharacterized protein. (1674 aa)
	PV10_06033	Uncharacterized protein. (1284 aa)
	PV10_05907	Uncharacterized protein. (1860 aa)
	PV10_08739	Uncharacterized protein. (1665 aa)
	PV10_08527	Uncharacterized protein. (1086 aa)
	PV10_01723	Uncharacterized protein. (1247 aa)
	PV10_01680	Uncharacterized protein. (918 aa)
	PV10_01284	Helicase ATP-binding domain-containing protein. (470 aa)
	PV10_01245	Uncharacterized protein; Belongs to the DEAD box helicase family. (516 aa)
	PV10_01221	Uncharacterized protein. (714 aa)
	PV10_00822	Uncharacterized protein. (1249 aa)
	PV10_00534	RNA helicase. (629 aa)
	PV10_00498	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family. (512 aa)
	PV10_00216	Uncharacterized protein. (1570 aa)
	PV10_00187	Uncharacterized protein. (1122 aa)
	PV10_02846	RNA helicase. (635 aa)
	PV10_02527	ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (496 aa)
	PV10_02119	Uncharacterized protein. (1418 aa)
	PV10_04721	Uncharacterized protein. (1241 aa)
	PV10_06376	Uncharacterized protein. (918 aa)
	PV10_05702	Uncharacterized protein. (1460 aa)
	PV10_05685	Uncharacterized protein. (1437 aa)
	PV10_07274	Uncharacterized protein. (1195 aa)
	PV10_08751	Uncharacterized protein. (945 aa)
	PV10_09137	Uncharacterized protein; Belongs to the DEAD box helicase family. (591 aa)
	PV10_09064	Uncharacterized protein; Belongs to the DEAD box helicase family. (617 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_06108	PV10_00534	A0A0D1ZUR0	A0A0D1X4J0	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	RNA helicase.	0.591
B0A52_06108	PV10_01096	A0A0D1ZUR0	A0A0D1ZTS4	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.584
B0A52_06108	PV10_01172	A0A0D1ZUR0	A0A0D1ZS86	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.808
B0A52_06108	PV10_01245	A0A0D1ZUR0	A0A0D1X6P9	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.418
B0A52_06108	PV10_01284	A0A0D1ZUR0	A0A0D1X6U7	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Helicase ATP-binding domain-containing protein.	0.543
B0A52_06108	PV10_01723	A0A0D1ZUR0	A0A0D1X809	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.503
B0A52_06108	PV10_02119	A0A0D1ZUR0	A0A0D1WXZ4	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.409
B0A52_06108	PV10_02506	A0A0D1ZUR0	A0A0D1ZLF5	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.451
B0A52_06108	PV10_02527	A0A0D1ZUR0	A0A0D1WZ62	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family.	0.653
B0A52_06108	PV10_02846	A0A0D1ZUR0	A0A0D1X084	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	RNA helicase.	0.509
B0A52_06108	PV10_03067	A0A0D1ZUR0	A0A0D2A8V5	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase ded1, variant; Belongs to the DEAD box helicase family.	0.405
B0A52_06108	PV10_03222	A0A0D1ZUR0	A0A0D1Y4K9	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.814
B0A52_06108	PV10_04166	A0A0D1ZUR0	A0A0D1ZDX5	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase DBP10.	0.460
B0A52_06108	PV10_04246	A0A0D1ZUR0	A0A0D2A1W0	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.771
B0A52_06108	PV10_04584	A0A0D1ZUR0	A0A0D2A2U2	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.575
B0A52_06108	PV10_04719	A0A0D1ZUR0	A0A0D2A3G6	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.499
B0A52_06108	PV10_04721	A0A0D1ZUR0	A0A0D1WVZ4	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.863
B0A52_06108	PV10_04906	A0A0D1ZUR0	A0A0D1XZL6	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	RNA helicase.	0.651
B0A52_06108	PV10_04977	A0A0D1ZUR0	A0A0D1ZIN4	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.578
B0A52_06108	PV10_05086	A0A0D1ZUR0	A0A0D1ZGV2	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.818