9 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_05878	Protein kinase domain-containing protein. (759 aa)
	PV10_02931	UBIQUITIN_CONJUGAT_2 domain-containing protein. (161 aa)
	PV10_03762	Uncharacterized protein. (370 aa)
	PV10_07984	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (338 aa)
	PV10_03207	Polyubiquitin. (229 aa)
	PV10_03642	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (184 aa)
	PV10_01770	ANAPC5 domain-containing protein. (770 aa)
	PV10_08689	BZIP domain-containing protein. (291 aa)
	B0A52_00659	Ubiquitin-40S ribosomal protein S27a. (154 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_00659	PV10_01770	A0A0D1ZQI9	A0A0D1YBR6	Ubiquitin-40S ribosomal protein S27a.	ANAPC5 domain-containing protein.	0.761
B0A52_00659	PV10_02931	A0A0D1ZQI9	A0A0D2A8D6	Ubiquitin-40S ribosomal protein S27a.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.889
B0A52_00659	PV10_03207	A0A0D1ZQI9	A0A0D1Y4J0	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin.	0.969
B0A52_00659	PV10_03642	A0A0D1ZQI9	A0A0D1Y5Z0	Ubiquitin-40S ribosomal protein S27a.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.775
B0A52_00659	PV10_03762	A0A0D1ZQI9	A0A0D2A0A3	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.681
B0A52_00659	PV10_05878	A0A0D1ZQI9	A0A0D1ZWX9	Ubiquitin-40S ribosomal protein S27a.	Protein kinase domain-containing protein.	0.631
B0A52_00659	PV10_07984	A0A0D1ZQI9	A0A0D1WHI9	Ubiquitin-40S ribosomal protein S27a.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.896
PV10_01770	B0A52_00659	A0A0D1YBR6	A0A0D1ZQI9	ANAPC5 domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.761
PV10_01770	PV10_02931	A0A0D1YBR6	A0A0D2A8D6	ANAPC5 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.753
PV10_01770	PV10_03207	A0A0D1YBR6	A0A0D1Y4J0	ANAPC5 domain-containing protein.	Polyubiquitin.	0.902
PV10_01770	PV10_03642	A0A0D1YBR6	A0A0D1Y5Z0	ANAPC5 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.995
PV10_01770	PV10_05878	A0A0D1YBR6	A0A0D1ZWX9	ANAPC5 domain-containing protein.	Protein kinase domain-containing protein.	0.909
PV10_01770	PV10_07984	A0A0D1YBR6	A0A0D1WHI9	ANAPC5 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.993
PV10_01770	PV10_08689	A0A0D1YBR6	A0A0D1Z5B3	ANAPC5 domain-containing protein.	BZIP domain-containing protein.	0.761
PV10_02931	B0A52_00659	A0A0D2A8D6	A0A0D1ZQI9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.889
PV10_02931	PV10_01770	A0A0D2A8D6	A0A0D1YBR6	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ANAPC5 domain-containing protein.	0.753
PV10_02931	PV10_03207	A0A0D2A8D6	A0A0D1Y4J0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Polyubiquitin.	0.914
PV10_02931	PV10_03642	A0A0D2A8D6	A0A0D1Y5Z0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.740
PV10_02931	PV10_03762	A0A0D2A8D6	A0A0D2A0A3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.613
PV10_02931	PV10_05878	A0A0D2A8D6	A0A0D1ZWX9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Protein kinase domain-containing protein.	0.545