23 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_08524	Uncharacterized protein. (674 aa)
	PV10_09190	Nup188_C domain-containing protein. (1825 aa)
	PV10_04472	Uncharacterized protein. (1676 aa)
	PV10_04199	Uncharacterized protein. (652 aa)
	PV10_05574	Uncharacterized protein; Belongs to the argonaute family. (1000 aa)
	PV10_07913	Uncharacterized protein. (1486 aa)
	PV10_07349	Uncharacterized protein. (1120 aa)
	PV10_06980	RanBD1 domain-containing protein. (564 aa)
	PV10_08034	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (970 aa)
	PV10_00608	Nsp1_C domain-containing protein. (694 aa)
	PV10_00257	C3H1-type domain-containing protein. (715 aa)
	PV10_03497	Piwi domain-containing protein. (1065 aa)
	PV10_07229	Uncharacterized protein. (1365 aa)
	PV10_04191	RanBD1 domain-containing protein. (263 aa)
	PV10_06697	Nup54 domain-containing protein. (459 aa)
	PV10_08458	Uncharacterized protein. (1323 aa)
	PV10_01967	Uncharacterized protein. (441 aa)
	PV10_06388	Uncharacterized protein. (937 aa)
	PV10_01839	Peptidase S59 domain-containing protein. (1954 aa)
	PV10_01597	TPR_MLP1_2 domain-containing protein. (2027 aa)
	B0A52_00854	Histone H2B; Belongs to the histone H2B family. (140 aa)
	B0A52_04130	Nucleoporin GLE2. (362 aa)
	PV10_01003	Importin N-terminal domain-containing protein. (1051 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_00854	PV10_03497	A0A0D1ZR89	A0A0D1Y5C9	Histone H2B; Belongs to the histone H2B family.	Piwi domain-containing protein.	0.647
B0A52_00854	PV10_05574	A0A0D1ZR89	A0A0D1ZAJ4	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein; Belongs to the argonaute family.	0.647
B0A52_04130	PV10_00257	A0A0D2A9U4	A0A0D1Y6L8	Nucleoporin GLE2.	C3H1-type domain-containing protein.	0.981
B0A52_04130	PV10_00608	A0A0D2A9U4	A0A0D1Y7P8	Nucleoporin GLE2.	Nsp1_C domain-containing protein.	0.926
B0A52_04130	PV10_01003	A0A0D2A9U4	A0A0D2AE98	Nucleoporin GLE2.	Importin N-terminal domain-containing protein.	0.654
B0A52_04130	PV10_01597	A0A0D2A9U4	A0A0D1ZTJ6	Nucleoporin GLE2.	TPR_MLP1_2 domain-containing protein.	0.989
B0A52_04130	PV10_01839	A0A0D2A9U4	A0A0D1ZVX2	Nucleoporin GLE2.	Peptidase S59 domain-containing protein.	0.999
B0A52_04130	PV10_03497	A0A0D2A9U4	A0A0D1Y5C9	Nucleoporin GLE2.	Piwi domain-containing protein.	0.676
B0A52_04130	PV10_04191	A0A0D2A9U4	A0A0D1WUK2	Nucleoporin GLE2.	RanBD1 domain-containing protein.	0.799
B0A52_04130	PV10_04199	A0A0D2A9U4	A0A0D1ZE13	Nucleoporin GLE2.	Uncharacterized protein.	0.799
B0A52_04130	PV10_04472	A0A0D2A9U4	A0A0D1ZHE8	Nucleoporin GLE2.	Uncharacterized protein.	0.872
B0A52_04130	PV10_05574	A0A0D2A9U4	A0A0D1ZAJ4	Nucleoporin GLE2.	Uncharacterized protein; Belongs to the argonaute family.	0.676
B0A52_04130	PV10_06697	A0A0D2A9U4	A0A0D1WSS9	Nucleoporin GLE2.	Nup54 domain-containing protein.	0.919
B0A52_04130	PV10_06980	A0A0D2A9U4	A0A0D1Z6S3	Nucleoporin GLE2.	RanBD1 domain-containing protein.	0.794
B0A52_04130	PV10_07229	A0A0D2A9U4	A0A0D1XP20	Nucleoporin GLE2.	Uncharacterized protein.	0.991
B0A52_04130	PV10_07349	A0A0D2A9U4	A0A0D1Z7T3	Nucleoporin GLE2.	Uncharacterized protein.	0.989
B0A52_04130	PV10_07913	A0A0D2A9U4	A0A0D1Z9D3	Nucleoporin GLE2.	Uncharacterized protein.	0.975
B0A52_04130	PV10_08034	A0A0D2A9U4	A0A0D1Z0J3	Nucleoporin GLE2.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.884
B0A52_04130	PV10_08458	A0A0D2A9U4	A0A0D1WIX1	Nucleoporin GLE2.	Uncharacterized protein.	0.843
B0A52_04130	PV10_08524	A0A0D2A9U4	A0A0D1ZQ24	Nucleoporin GLE2.	Uncharacterized protein.	0.621