21 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_04579	Uncharacterized protein. (132 aa)
	PV10_04229	Uncharacterized protein. (444 aa)
	PV10_05180	AAA domain-containing protein. (1122 aa)
	PV10_04710	CBFD_NFYB_HMF domain-containing protein. (185 aa)
	PV10_02403	UmuC domain-containing protein. (723 aa)
	B0A52_00659	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	PV10_07844	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (607 aa)
	PV10_01834	UmuC domain-containing protein. (603 aa)
	PV10_04153	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1162 aa)
	PV10_05118	Uncharacterized protein. (226 aa)
	PV10_07516	Uncharacterized protein; Belongs to the peptidase C19 family. (1529 aa)
	PV10_02688	Uncharacterized protein. (507 aa)
	PV10_06327	Uncharacterized protein. (1113 aa)
	PV10_03294	Uncharacterized protein. (790 aa)
	PV10_05490	UmuC domain-containing protein. (652 aa)
	PV10_05760	USP domain-containing protein. (785 aa)
	PV10_06783	Ubiquitin carboxyl-terminal hydrolase. (912 aa)
	PV10_03207	Polyubiquitin. (229 aa)
	PV10_08112	Uncharacterized protein. (158 aa)
	PV10_08689	BZIP domain-containing protein. (291 aa)
	PV10_06484	Zds_C domain-containing protein. (930 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_00659	PV10_01834	A0A0D1ZQI9	A0A0D1ZVW9	Ubiquitin-40S ribosomal protein S27a.	UmuC domain-containing protein.	0.898
B0A52_00659	PV10_02403	A0A0D1ZQI9	A0A0D1ZL38	Ubiquitin-40S ribosomal protein S27a.	UmuC domain-containing protein.	0.755
B0A52_00659	PV10_02688	A0A0D1ZQI9	A0A0D2A7N4	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.461
B0A52_00659	PV10_03207	A0A0D1ZQI9	A0A0D1Y4J0	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin.	0.969
B0A52_00659	PV10_03294	A0A0D1ZQI9	A0A0D1X1M7	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.461
B0A52_00659	PV10_04153	A0A0D1ZQI9	A0A0D2A1H0	Ubiquitin-40S ribosomal protein S27a.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.833
B0A52_00659	PV10_04229	A0A0D1ZQI9	A0A0D1ZGR5	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.461
B0A52_00659	PV10_04579	A0A0D1ZQI9	A0A0D1ZF32	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.461
B0A52_00659	PV10_05180	A0A0D1ZQI9	A0A0D1ZHE5	Ubiquitin-40S ribosomal protein S27a.	AAA domain-containing protein.	0.632
B0A52_00659	PV10_05490	A0A0D1ZQI9	A0A0D1XRZ3	Ubiquitin-40S ribosomal protein S27a.	UmuC domain-containing protein.	0.827
B0A52_00659	PV10_05760	A0A0D1ZQI9	A0A0D1XSS8	Ubiquitin-40S ribosomal protein S27a.	USP domain-containing protein.	0.705
B0A52_00659	PV10_06327	A0A0D1ZQI9	A0A0D1WRP4	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.847
B0A52_00659	PV10_06484	A0A0D1ZQI9	A0A0D1ZBF9	Ubiquitin-40S ribosomal protein S27a.	Zds_C domain-containing protein.	0.461
B0A52_00659	PV10_06783	A0A0D1ZQI9	A0A0D1XVQ0	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin carboxyl-terminal hydrolase.	0.718
B0A52_00659	PV10_07516	A0A0D1ZQI9	A0A0D1WME2	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.731
B0A52_00659	PV10_07844	A0A0D1ZQI9	A0A0D1ZUU4	Ubiquitin-40S ribosomal protein S27a.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.633
B0A52_00659	PV10_08112	A0A0D1ZQI9	A0A0D1Z0U6	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.461
PV10_01834	B0A52_00659	A0A0D1ZVW9	A0A0D1ZQI9	UmuC domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.898
PV10_01834	PV10_02403	A0A0D1ZVW9	A0A0D1ZL38	UmuC domain-containing protein.	UmuC domain-containing protein.	0.773
PV10_01834	PV10_03207	A0A0D1ZVW9	A0A0D1Y4J0	UmuC domain-containing protein.	Polyubiquitin.	0.942