STRINGSTRING
PV10_01180 PV10_01180 PV10_09137 PV10_09137 PV10_08488 PV10_08488 B0A52_09281 B0A52_09281 B0A52_01579 B0A52_01579 PV10_07365 PV10_07365 PV10_07389 PV10_07389 PV10_05630 PV10_05630 PV10_05676 PV10_05676 PV10_05875 PV10_05875 PV10_05883 PV10_05883 PV10_06298 PV10_06298 PV10_03715 PV10_03715 PV10_04506 PV10_04506 PV10_04762 PV10_04762 PV10_01953 PV10_01953 NOP7 NOP7 PV10_02527 PV10_02527 RPS0 RPS0 PV10_03579 PV10_03579 TSR3 TSR3 B0A52_00771 B0A52_00771 PV10_00469 PV10_00469 PV10_00862 PV10_00862 PV10_00870 PV10_00870 PV10_01007 PV10_01007 PV10_01179 PV10_01179 PV10_01786 PV10_01786 PV10_08052 PV10_08052 PV10_08173 PV10_08173 PV10_08401 PV10_08401 PV10_08527 PV10_08527 B0A52_04221 B0A52_04221 B0A52_04198 B0A52_04198 PV10_07495 PV10_07495 PV10_07560 PV10_07560 PV10_07600 PV10_07600 PV10_06033 PV10_06033 PV10_06511 PV10_06511 PV10_06598 PV10_06598 PV10_03701 PV10_03701 PV10_04175 PV10_04175 PV10_04507 PV10_04507 PV10_04839 PV10_04839 PV10_05266 PV10_05266 YTM1 YTM1 B0A52_04423 B0A52_04423 B0A52_07967 B0A52_07967 PV10_02329 PV10_02329 PV10_02838 PV10_02838 PV10_02871 PV10_02871 B0A52_07527 B0A52_07527 PV10_03081 PV10_03081 B0A52_09227 B0A52_09227 B0A52_04124 B0A52_04124 B0A52_00578 B0A52_00578 PV10_00112 PV10_00112 B0A52_01114 B0A52_01114 PV10_00565 PV10_00565 PV10_01420 PV10_01420 PV10_01503 PV10_01503 PV10_01513 PV10_01513 PV10_09007 PV10_09007 PV10_08243 PV10_08243 PV10_08407 PV10_08407 B0A52_05243 B0A52_05243 B0A52_05218 B0A52_05218 PV10_08181 PV10_08181 PV10_07328 PV10_07328 PV10_08760 PV10_08760 PV10_07749 PV10_07749 PV10_07293 PV10_07293 PV10_07488 PV10_07488 RPS1 RPS1 PV10_07761 PV10_07761 PV10_05756 PV10_05756 B0A52_05115 B0A52_05115 PV10_05758 PV10_05758 PV10_06418 PV10_06418 PV10_06744 PV10_06744 PV10_06416 PV10_06416 PV10_04245 PV10_04245 PV10_04622 PV10_04622 PV10_04662 PV10_04662 PV10_02069 PV10_02069 B0A52_07938 B0A52_07938 PV10_02273 PV10_02273 PV10_05142 PV10_05142 PV10_02494 PV10_02494 B0A52_08773 B0A52_08773 PV10_02042 PV10_02042 PV10_02754 PV10_02754 PV10_02813 PV10_02813 PV10_02365 PV10_02365 PV10_03061 PV10_03061 PV10_03474 PV10_03474 PV10_09194 PV10_09194 PV10_08983 PV10_08983 B0A52_06706 B0A52_06706 PV10_09112 PV10_09112 PV10_00031 PV10_00031 PV10_00184 PV10_00184 PV10_00199 PV10_00199 B0A52_07157 B0A52_07157 PV10_03516 PV10_03516 PV10_08528 PV10_08528 PV10_00043 PV10_00043 PV10_08657 PV10_08657 PV10_00215 PV10_00215 PV10_08745 PV10_08745 ERB1 ERB1 B0A52_09318 B0A52_09318 PV10_01172 PV10_01172 PV10_07133 PV10_07133 B0A52_04749 B0A52_04749 PV10_01573 PV10_01573 PV10_07697 PV10_07697 PV10_01894 PV10_01894 PV10_01373 PV10_01373 PV10_05587 PV10_05587 PV10_05653 PV10_05653 PV10_05700 PV10_05700 PV10_06081 PV10_06081 PV10_06159 PV10_06159 NAT10 NAT10 PV10_06547 PV10_06547 PV10_03690 PV10_03690 PV10_04523 PV10_04523 SPB1 SPB1 PV10_02369 PV10_02369 PV10_02677 PV10_02677 PV10_03378 PV10_03378 B0A52_06696 B0A52_06696 PV10_00501 PV10_00501 PV10_00984 PV10_00984 PV10_01163 PV10_01163 PV10_01510 PV10_01510 PV10_01668 PV10_01668
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV10_0118040S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (98 aa)
PV10_09137Uncharacterized protein; Belongs to the DEAD box helicase family. (591 aa)
PV10_08488Uncharacterized protein. (761 aa)
B0A52_0928140S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (215 aa)
B0A52_0157940S ribosomal protein S16-B; Belongs to the universal ribosomal protein uS9 family. (143 aa)
PV10_0736518S rRNA biogenesis protein RCL1. (405 aa)
PV10_0738960S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
PV10_05630Uncharacterized protein. (302 aa)
PV10_05676ULP_PROTEASE domain-containing protein. (902 aa)
PV10_05875Uncharacterized protein. (169 aa)
PV10_05883U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (746 aa)
PV10_06298Ribosomal RNA small subunit methyltransferase NEP1. (258 aa)
PV10_03715U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (281 aa)
PV10_04506Uncharacterized protein. (283 aa)
PV10_04762RNase_PH domain-containing protein. (633 aa)
PV10_01953Uncharacterized protein. (1004 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (689 aa)
PV10_02527ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (496 aa)
RPS040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (286 aa)
PV10_03579RNase_PH domain-containing protein. (258 aa)
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (390 aa)
B0A52_0077140S ribosomal protein S20. (116 aa)
PV10_00469Uncharacterized protein. (384 aa)
PV10_00862Uncharacterized protein. (1038 aa)
PV10_00870WD_REPEATS_REGION domain-containing protein. (1063 aa)
PV10_01007CBF domain-containing protein. (290 aa)
PV10_0117940S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (130 aa)
PV10_01786Bms1-type G domain-containing protein. (1173 aa)
PV10_08052Methyltransf_25 domain-containing protein. (214 aa)
PV10_08173WD_REPEATS_REGION domain-containing protein. (532 aa)
PV10_08401U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (762 aa)
PV10_08527Uncharacterized protein. (1086 aa)
B0A52_0422140S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
B0A52_0419840S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (193 aa)
PV10_07495Nop domain-containing protein. (521 aa)
PV10_07560Uncharacterized protein. (906 aa)
PV10_0760040S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
PV10_06033Uncharacterized protein. (1284 aa)
PV10_06511Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (581 aa)
PV10_0659820S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (433 aa)
PV10_03701Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
PV10_04175Uncharacterized protein. (397 aa)
PV10_04507Uncharacterized protein. (355 aa)
PV10_04839Exonuclease domain-containing protein. (317 aa)
PV10_05266Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (350 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (462 aa)
B0A52_0442340S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (122 aa)
B0A52_0796740S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (260 aa)
PV10_02329Pre-rRNA-processing protein PNO1. (263 aa)
PV10_028385'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1019 aa)
PV10_02871Nucleolar protein 58. (624 aa)
B0A52_07527rRNA-processing protein FCF1. (193 aa)
PV10_03081FtsJ domain-containing protein. (377 aa)
B0A52_09227S4 RNA-binding domain-containing protein. (188 aa)
B0A52_0412440S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (134 aa)
B0A52_0057860S ribosomal protein L18-B. (189 aa)
PV10_0011240S ribosomal protein S19. (154 aa)
B0A52_0111440S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (155 aa)
PV10_00565HRDC domain-containing protein. (840 aa)
PV10_01420RNase_PH domain-containing protein. (272 aa)
PV10_01503WD_REPEATS_REGION domain-containing protein. (555 aa)
PV10_01513Bms1-type G domain-containing protein. (806 aa)
PV10_09007Uncharacterized protein. (554 aa)
PV10_08243KH_dom_type_1 domain-containing protein. (245 aa)
PV10_08407Uncharacterized protein. (439 aa)
B0A52_0524340S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (266 aa)
B0A52_0521840S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (150 aa)
PV10_08181Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (372 aa)
PV10_0732840S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
PV10_08760Uncharacterized protein. (594 aa)
PV10_07749WD_REPEATS_REGION domain-containing protein. (973 aa)
PV10_07293Uncharacterized protein. (1034 aa)
PV10_07488KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (344 aa)
RPS140S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (258 aa)
PV10_07761Uncharacterized protein. (537 aa)
PV10_05756RNase_PH domain-containing protein. (367 aa)
B0A52_0511540S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (146 aa)
PV10_05758Uncharacterized protein. (468 aa)
PV10_06418DRIM domain-containing protein. (2584 aa)
PV10_06744WD_REPEATS_REGION domain-containing protein. (889 aa)
PV10_06416ULP_PROTEASE domain-containing protein. (1380 aa)
PV10_04245WD_REPEATS_REGION domain-containing protein. (632 aa)
PV10_04622RIO domain-containing protein. (392 aa)
PV10_04662Uncharacterized protein. (1815 aa)
PV10_02069Uncharacterized protein. (170 aa)
B0A52_07938Uncharacterized protein. (272 aa)
PV10_02273Uncharacterized protein. (338 aa)
PV10_05142Sec2p domain-containing protein. (293 aa)
PV10_02494Uncharacterized protein. (382 aa)
B0A52_0877340S ribosomal protein S11-B; Belongs to the universal ribosomal protein uS17 family. (161 aa)
PV10_02042Uncharacterized protein. (300 aa)
PV10_02754Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (176 aa)
PV10_02813Uncharacterized protein. (294 aa)
PV10_02365WD_REPEATS_REGION domain-containing protein. (934 aa)
PV10_03061Uncharacterized protein. (221 aa)
PV10_03474Uncharacterized protein. (457 aa)
PV10_09194Brix domain-containing protein. (296 aa)
PV10_0898340S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
B0A52_0670660S ribosomal protein L34-B. (117 aa)
PV10_09112Uncharacterized protein. (305 aa)
PV10_00031THUMP domain-containing protein. (343 aa)
PV10_00184WD_REPEATS_REGION domain-containing protein. (533 aa)
PV10_00199CLP1_P domain-containing protein. (638 aa)
B0A52_0715740S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
PV10_03516Uncharacterized protein. (124 aa)
PV10_08528Uncharacterized protein; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (299 aa)
PV10_00043ECR1_N domain-containing protein. (377 aa)
PV10_08657Uncharacterized protein. (489 aa)
PV10_00215SpoU_methylase domain-containing protein. (460 aa)
PV10_08745S4 RNA-binding domain-containing protein. (449 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (783 aa)
B0A52_0931840S ribosomal protein S17. (149 aa)
PV10_01172Uncharacterized protein. (678 aa)
PV10_07133Uncharacterized protein. (350 aa)
B0A52_0474940S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (203 aa)
PV10_01573RNase_PH domain-containing protein. (361 aa)
PV10_07697Uncharacterized protein. (519 aa)
PV10_0189440S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (239 aa)
PV10_01373CP-type G domain-containing protein. (550 aa)
PV10_05587Ipi1_N domain-containing protein. (332 aa)
PV10_05653Ribosomal_L28e domain-containing protein. (152 aa)
PV10_0570060S ribosomal protein L2-A. (254 aa)
PV10_06081Abhydrolase_3 domain-containing protein. (506 aa)
PV10_06159RIX1 domain-containing protein. (770 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1101 aa)
PV10_06547rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (402 aa)
PV10_03690Sas10 domain-containing protein. (607 aa)
PV10_04523Uncharacterized protein. (214 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (832 aa)
PV10_02369WD_REPEATS_REGION domain-containing protein. (599 aa)
PV10_02677WD_REPEATS_REGION domain-containing protein. (440 aa)
PV10_03378BP28CT domain-containing protein. (1838 aa)
B0A52_0669660S ribosomal protein L43-A. (92 aa)
PV10_00501U3 small nucleolar RNA-associated protein 22. (1140 aa)
PV10_00984S10_plectin domain-containing protein. (164 aa)
PV10_01163rRNA 2'-O-methyltransferase fibrillarin. (326 aa)
PV10_01510Utp12 domain-containing protein. (894 aa)
PV10_01668Uncharacterized protein. (931 aa)
Your Current Organism:
Exophiala mesophila
NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila
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