23 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_08779	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (117 aa)
	PV10_07591	RPOLD domain-containing protein. (373 aa)
	PV10_05438	Uncharacterized protein. (348 aa)
	PV10_06381	DNA-directed RNA polymerase. (196 aa)
	PV10_05370	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (297 aa)
	PV10_04135	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (567 aa)
	B0A52_06028	TATA-box-binding protein, variant. (257 aa)
	PV10_05062	Uncharacterized protein. (363 aa)
	PV10_03882	Uncharacterized protein. (777 aa)
	PV10_01009	Uncharacterized protein. (1209 aa)
	PV10_08275	ENDO3c domain-containing protein. (403 aa)
	PV10_00204	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1591 aa)
	B0A52_09440	Uncharacterized protein. (238 aa)
	PV10_04098	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1222 aa)
	PV10_03876	Uncharacterized protein. (353 aa)
	PV10_07636	BTB domain-containing protein. (957 aa)
	B0A52_01643	Uncharacterized protein. (152 aa)
	PV10_08841	Myb_DNA-bind_7 domain-containing protein. (662 aa)
	PV10_00806	Uncharacterized protein. (936 aa)
	PV10_03511	Uncharacterized protein. (453 aa)
	PV10_04777	B-block_TFIIIC domain-containing protein. (1963 aa)
	PV10_04587	Uncharacterized protein. (567 aa)
	PV10_04147	Uncharacterized protein. (556 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_01643	B0A52_06028	A0A0D1Z529	A0A0D2AFF2	Uncharacterized protein.	TATA-box-binding protein, variant.	0.980
B0A52_01643	B0A52_09440	A0A0D1Z529	A0A0D1ZJS0	Uncharacterized protein.	Uncharacterized protein.	0.999
B0A52_01643	PV10_00204	A0A0D1Z529	A0A0D1ZNV4	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B0A52_01643	PV10_00806	A0A0D1Z529	A0A0D1Y8H5	Uncharacterized protein.	Uncharacterized protein.	0.915
B0A52_01643	PV10_01009	A0A0D1Z529	A0A0D1ZRJ8	Uncharacterized protein.	Uncharacterized protein.	0.663
B0A52_01643	PV10_03511	A0A0D1Z529	A0A0D1Y5E8	Uncharacterized protein.	Uncharacterized protein.	0.993
B0A52_01643	PV10_03876	A0A0D1Z529	A0A0D1ZD54	Uncharacterized protein.	Uncharacterized protein.	0.622
B0A52_01643	PV10_04098	A0A0D1Z529	A0A0D1ZG60	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B0A52_01643	PV10_04135	A0A0D1Z529	A0A0D1XXB2	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
B0A52_01643	PV10_04587	A0A0D1Z529	A0A0D1XYQ2	Uncharacterized protein.	Uncharacterized protein.	0.993
B0A52_01643	PV10_05062	A0A0D1Z529	A0A0D2A4I4	Uncharacterized protein.	Uncharacterized protein.	0.992
B0A52_01643	PV10_05370	A0A0D1Z529	A0A0D1XRL2	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.960
B0A52_01643	PV10_05438	A0A0D1Z529	A0A0D1WP42	Uncharacterized protein.	Uncharacterized protein.	0.959
B0A52_01643	PV10_06381	A0A0D1Z529	A0A0D1WRU2	Uncharacterized protein.	DNA-directed RNA polymerase.	0.997
B0A52_01643	PV10_07591	A0A0D1Z529	A0A0D1WMM2	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
B0A52_01643	PV10_07636	A0A0D1Z529	A0A0D1Z642	Uncharacterized protein.	BTB domain-containing protein.	0.945
B0A52_01643	PV10_08779	A0A0D1Z529	A0A0D1XLZ3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
B0A52_01643	PV10_08841	A0A0D1Z529	A0A0D1Z3C7	Uncharacterized protein.	Myb_DNA-bind_7 domain-containing protein.	0.911
B0A52_06028	B0A52_01643	A0A0D2AFF2	A0A0D1Z529	TATA-box-binding protein, variant.	Uncharacterized protein.	0.980
B0A52_06028	B0A52_09440	A0A0D2AFF2	A0A0D1ZJS0	TATA-box-binding protein, variant.	Uncharacterized protein.	0.986