28 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_01340	UBIQUITIN_CONJUGAT_2 domain-containing protein. (349 aa)
	PV10_07984	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (338 aa)
	B0A52_02428	Ubiquitin-conjugating enzyme E2 8; Belongs to the ubiquitin-conjugating enzyme family. (186 aa)
	PV10_02119	Uncharacterized protein. (1418 aa)
	PV10_02718	Uncharacterized protein. (406 aa)
	PV10_00822	Uncharacterized protein. (1249 aa)
	PV10_08535	Uncharacterized protein. (487 aa)
	PV10_07758	UBIQUITIN_CONJUGAT_2 domain-containing protein. (197 aa)
	PV10_06505	Uncharacterized protein. (455 aa)
	PV10_02580	Uncharacterized protein. (621 aa)
	PV10_03207	Polyubiquitin. (229 aa)
	PV10_00274	Plus3 domain-containing protein. (606 aa)
	PV10_08116	Uncharacterized protein. (770 aa)
	PV10_08689	BZIP domain-containing protein. (291 aa)
	PV10_05898	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (243 aa)
	PV10_06158	Uncharacterized protein. (964 aa)
	PV10_06278	Uncharacterized protein. (1097 aa)
	PV10_05839	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (258 aa)
	PV10_06476	Uncharacterized protein. (1040 aa)
	PV10_04452	RING-type domain-containing protein. (476 aa)
	B0A52_03002	Ubiquitin-conjugating enzyme E2 15; Belongs to the ubiquitin-conjugating enzyme family. (169 aa)
	PV10_03667	Uncharacterized protein. (555 aa)
	B0A52_00659	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	B0A52_00854	Histone H2B; Belongs to the histone H2B family. (140 aa)
	PV10_07019	Uncharacterized protein. (308 aa)
	PV10_01824	Uncharacterized protein. (1197 aa)
	PV10_01931	Uncharacterized protein. (451 aa)
	PV10_04448	Uncharacterized protein. (1153 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_00659	B0A52_00854	A0A0D1ZQI9	A0A0D1ZR89	Ubiquitin-40S ribosomal protein S27a.	Histone H2B; Belongs to the histone H2B family.	0.869
B0A52_00659	B0A52_02428	A0A0D1ZQI9	A0A0D1WS38	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin-conjugating enzyme E2 8; Belongs to the ubiquitin-conjugating enzyme family.	0.678
B0A52_00659	B0A52_03002	A0A0D1ZQI9	A0A0D1ZKB6	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin-conjugating enzyme E2 15; Belongs to the ubiquitin-conjugating enzyme family.	0.884
B0A52_00659	PV10_00822	A0A0D1ZQI9	A0A0D1X5J0	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.618
B0A52_00659	PV10_01824	A0A0D1ZQI9	A0A0D1ZVW1	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.618
B0A52_00659	PV10_01931	A0A0D1ZQI9	A0A0D1ZW60	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.618
B0A52_00659	PV10_02119	A0A0D1ZQI9	A0A0D1WXZ4	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.743
B0A52_00659	PV10_02718	A0A0D1ZQI9	A0A0D1WZV6	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.884
B0A52_00659	PV10_03207	A0A0D1ZQI9	A0A0D1Y4J0	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin.	0.969
B0A52_00659	PV10_03667	A0A0D1ZQI9	A0A0D1ZNA4	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.894
B0A52_00659	PV10_04448	A0A0D1ZQI9	A0A0D2A2B7	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.618
B0A52_00659	PV10_04452	A0A0D1ZQI9	A0A0D1ZEQ8	Ubiquitin-40S ribosomal protein S27a.	RING-type domain-containing protein.	0.617
B0A52_00659	PV10_05839	A0A0D1ZQI9	A0A0D1ZBB2	Ubiquitin-40S ribosomal protein S27a.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.936
B0A52_00659	PV10_05898	A0A0D1ZQI9	A0A0D1Z9F2	Ubiquitin-40S ribosomal protein S27a.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.946
B0A52_00659	PV10_06158	A0A0D1ZQI9	A0A0D1ZAD5	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.618
B0A52_00659	PV10_06278	A0A0D1ZQI9	A0A0D1ZAR5	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.618
B0A52_00659	PV10_06476	A0A0D1ZQI9	A0A0D1ZDK6	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.618
B0A52_00659	PV10_06505	A0A0D1ZQI9	A0A0D1XUY1	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.751
B0A52_00659	PV10_07758	A0A0D1ZQI9	A0A0D1XQS0	Ubiquitin-40S ribosomal protein S27a.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.784
B0A52_00659	PV10_07984	A0A0D1ZQI9	A0A0D1WHI9	Ubiquitin-40S ribosomal protein S27a.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.896