(37 nodes) RNA polymerase network (Exophiala mesophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_06381	DNA-directed RNA polymerase. (196 aa)
	PV10_07591	RPOLD domain-containing protein. (373 aa)
	PV10_07724	Uncharacterized protein. (839 aa)
	PV10_05438	Uncharacterized protein. (348 aa)
	PV10_04591	Uncharacterized protein. (328 aa)
	PV10_03231	Diphthamide biosynthesis protein 3. (102 aa)
	PV10_01512	Uncharacterized protein. (329 aa)
	PV10_08779	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (117 aa)
	PV10_05370	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (297 aa)
	PV10_06236	Transcription elongation factor S-II, variant. (306 aa)
	B0A52_02609	S1 domain-containing protein. (169 aa)
	PV10_04135	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (567 aa)
	PV10_04587	Uncharacterized protein. (567 aa)
	PV10_03511	Uncharacterized protein. (453 aa)
	PV10_03603	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1262 aa)
	PV10_06925	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (635 aa)
	B0A52_01817	RPOL4c domain-containing protein. (152 aa)
	B0A52_01643	Uncharacterized protein. (152 aa)
	PV10_06724	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (130 aa)
	PV10_06302	Uncharacterized protein. (556 aa)
	PV10_06445	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1218 aa)
	PV10_04073	Uncharacterized protein. (586 aa)
	PV10_04098	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1222 aa)
	PV10_04961	RPOLD domain-containing protein. (337 aa)
	PV10_01995	Uncharacterized protein. (203 aa)
	PV10_04710	CBFD_NFYB_HMF domain-containing protein. (185 aa)
	B0A52_09440	Uncharacterized protein. (238 aa)
	PV10_03006	RNA_pol_L_2 domain-containing protein. (122 aa)
	PV10_02682	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1742 aa)
	PV10_03478	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1761 aa)
	PV10_00204	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1591 aa)
	PV10_03370	RPA43_OB domain-containing protein. (475 aa)
	PV10_05633	RNA_pol_L_2 domain-containing protein. (129 aa)
	PV10_06117	Uncharacterized protein. (478 aa)
	PV10_04127	RBR-type E3 ubiquitin transferase. (734 aa)
	PV10_05062	Uncharacterized protein. (363 aa)
	PV10_03091	Uncharacterized protein. (329 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_01643	B0A52_01817	A0A0D1Z529	A0A0D1Z4K7	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
B0A52_01643	B0A52_02609	A0A0D1Z529	A0A0D1XUD0	Uncharacterized protein.	S1 domain-containing protein.	0.999
B0A52_01643	B0A52_09440	A0A0D1Z529	A0A0D1ZJS0	Uncharacterized protein.	Uncharacterized protein.	0.999
B0A52_01643	PV10_00204	A0A0D1Z529	A0A0D1ZNV4	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B0A52_01643	PV10_02682	A0A0D1Z529	A0A0D1ZM22	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B0A52_01643	PV10_03006	A0A0D1Z529	A0A0D1ZL15	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
B0A52_01643	PV10_03370	A0A0D1Z529	A0A0D1ZP40	Uncharacterized protein.	RPA43_OB domain-containing protein.	0.999
B0A52_01643	PV10_03478	A0A0D1Z529	A0A0D1ZMK2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B0A52_01643	PV10_03511	A0A0D1Z529	A0A0D1Y5E8	Uncharacterized protein.	Uncharacterized protein.	0.993
B0A52_01643	PV10_03603	A0A0D1Z529	A0A0D1Y5W5	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B0A52_01643	PV10_04098	A0A0D1Z529	A0A0D1ZG60	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B0A52_01643	PV10_04135	A0A0D1Z529	A0A0D1XXB2	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
B0A52_01643	PV10_04587	A0A0D1Z529	A0A0D1XYQ2	Uncharacterized protein.	Uncharacterized protein.	0.993
B0A52_01643	PV10_04961	A0A0D1Z529	A0A0D1ZGG2	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
B0A52_01643	PV10_05062	A0A0D1Z529	A0A0D2A4I4	Uncharacterized protein.	Uncharacterized protein.	0.992
B0A52_01643	PV10_05370	A0A0D1Z529	A0A0D1XRL2	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.960
B0A52_01643	PV10_05438	A0A0D1Z529	A0A0D1WP42	Uncharacterized protein.	Uncharacterized protein.	0.959
B0A52_01643	PV10_05633	A0A0D1Z529	A0A0D1ZWA0	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
B0A52_01643	PV10_06117	A0A0D1Z529	A0A0D1ZXP7	Uncharacterized protein.	Uncharacterized protein.	0.999
B0A52_01643	PV10_06236	A0A0D1Z529	A0A0D1XU54	Uncharacterized protein.	Transcription elongation factor S-II, variant.	0.989