11 items (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKB63314.1	UDP-glucose 4-epimerase. (298 aa)
	AKB63330.1	Glucose-1-phosphate thymidylyltransferase. (258 aa)
	AKB63331.1	dTDP-4-dehydrorhamnose reductase. (269 aa)
	AKB63332.1	dTDP-glucose 4,6-dehydratase. (318 aa)
	AKB63333.1	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (183 aa)
	AKB63337.1	dTDP-glucose 4,6-dehydratase. (334 aa)
	AKB63366.1	UDP-glucose 4-epimerase. (316 aa)
	AKB63367.1	UTP--glucose-1-phosphate uridylyltransferase. (323 aa)
	AKB63368.1	UDP-glucose 6-dehydrogenase. (427 aa)
	AKB63919.1	Galactose-1-phosphate uridylyltransferase. (330 aa)
	AKB65772.1	Glycosyltransferase. (381 aa)

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63314.1	AKB63330.1	MSMAS_0118	MSMAS_0134	UDP-glucose 4-epimerase.	Glucose-1-phosphate thymidylyltransferase.	0.944
AKB63314.1	AKB63331.1	MSMAS_0118	MSMAS_0135	UDP-glucose 4-epimerase.	dTDP-4-dehydrorhamnose reductase.	0.858
AKB63314.1	AKB63332.1	MSMAS_0118	MSMAS_0136	UDP-glucose 4-epimerase.	dTDP-glucose 4,6-dehydratase.	0.684
AKB63314.1	AKB63333.1	MSMAS_0118	MSMAS_0137	UDP-glucose 4-epimerase.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.792
AKB63314.1	AKB63337.1	MSMAS_0118	MSMAS_0141	UDP-glucose 4-epimerase.	dTDP-glucose 4,6-dehydratase.	0.912
AKB63314.1	AKB63366.1	MSMAS_0118	MSMAS_0170	UDP-glucose 4-epimerase.	UDP-glucose 4-epimerase.	0.915
AKB63314.1	AKB63367.1	MSMAS_0118	MSMAS_0171	UDP-glucose 4-epimerase.	UTP--glucose-1-phosphate uridylyltransferase.	0.969
AKB63314.1	AKB63368.1	MSMAS_0118	MSMAS_0172	UDP-glucose 4-epimerase.	UDP-glucose 6-dehydrogenase.	0.987
AKB63314.1	AKB63919.1	MSMAS_0118	MSMAS_0723	UDP-glucose 4-epimerase.	Galactose-1-phosphate uridylyltransferase.	0.965
AKB63314.1	AKB65772.1	MSMAS_0118	MSMAS_2576	UDP-glucose 4-epimerase.	Glycosyltransferase.	0.691
AKB63330.1	AKB63314.1	MSMAS_0134	MSMAS_0118	Glucose-1-phosphate thymidylyltransferase.	UDP-glucose 4-epimerase.	0.944
AKB63330.1	AKB63331.1	MSMAS_0134	MSMAS_0135	Glucose-1-phosphate thymidylyltransferase.	dTDP-4-dehydrorhamnose reductase.	0.979
AKB63330.1	AKB63332.1	MSMAS_0134	MSMAS_0136	Glucose-1-phosphate thymidylyltransferase.	dTDP-glucose 4,6-dehydratase.	0.999
AKB63330.1	AKB63333.1	MSMAS_0134	MSMAS_0137	Glucose-1-phosphate thymidylyltransferase.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.976
AKB63330.1	AKB63337.1	MSMAS_0134	MSMAS_0141	Glucose-1-phosphate thymidylyltransferase.	dTDP-glucose 4,6-dehydratase.	0.944
AKB63330.1	AKB63366.1	MSMAS_0134	MSMAS_0170	Glucose-1-phosphate thymidylyltransferase.	UDP-glucose 4-epimerase.	0.947
AKB63330.1	AKB63367.1	MSMAS_0134	MSMAS_0171	Glucose-1-phosphate thymidylyltransferase.	UTP--glucose-1-phosphate uridylyltransferase.	0.976
AKB63330.1	AKB63368.1	MSMAS_0134	MSMAS_0172	Glucose-1-phosphate thymidylyltransferase.	UDP-glucose 6-dehydrogenase.	0.938
AKB63330.1	AKB63919.1	MSMAS_0134	MSMAS_0723	Glucose-1-phosphate thymidylyltransferase.	Galactose-1-phosphate uridylyltransferase.	0.456
AKB63330.1	AKB65772.1	MSMAS_0134	MSMAS_2576	Glucose-1-phosphate thymidylyltransferase.	Glycosyltransferase.	0.770