STRINGSTRING
RUM_08110 RUM_08110 RUM_19960 RUM_19960 RUM_19980 RUM_19980 RUM_19990 RUM_19990 RUM_20000 RUM_20000 RUM_20060 RUM_20060
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RUM_08110Bacterial mobilisation protein (MobC). (114 aa)
RUM_19960Hypothetical protein. (140 aa)
RUM_19980TrbL/VirB6 plasmid conjugal transfer protein. (316 aa)
RUM_19990Hypothetical protein. (125 aa)
RUM_20000Domain of unknown function DUF87. (813 aa)
RUM_20060Hypothetical protein. (270 aa)
Your Current Organism:
Ruminococcus champanellensis
NCBI taxonomy Id: 213810
Other names: R. champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis 18P13, Ruminococcus champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis DSM 18848, Ruminococcus champanellensis JCM 17042, Ruminococcus champanellensis JCM 17042 = 18P13, Ruminococcus sp. 18P13
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