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YPO0033 YPO0033 smp smp YPO1440 YPO1440 YPO3518 YPO3518 YPO3565 YPO3565 uspA uspA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
YPO0033Possible exported protein; Similar to Escherichia coli hypothetical protein YicH SW:YICH_ECOLI (P31433) (569 aa) fasta scores: E(): 0,49.0% id in 563 aa. (569 aa)
smpPutative membrane protein; Similar to Escherichia coli hypothetical protein Smp SW:SMP_ECOLI (P18838) (214 aa) fasta scores: E(): 0, 65.7% id in 213 aa. (233 aa)
YPO1440Similar to Escherichia coli helicase IV HelD SW:HELD_ECOLI (P15038) (684 aa) fasta scores: E(): 0, 66.7% id in 684 aa, and to Vibrio cholerae helicase IV VCA0717 TR:Q9KLM6 (EMBL:AE004401) (699 aa) fasta scores: E(): 0,37.2% id in 682 aa. CDS contains an internal deletion or deletions, around codon 320, relative to the E. coli and V. cholerae proteins. (661 aa)
YPO3518Putative exported protein; Similar to Escherichia coli hypothetical 11.2 kDa protein in argR-cafA intergenic region precursor YhcN SW:YHCN_ECOLI (P46477) (87 aa) fasta scores: E(): 4.9e-16,54.0% id in 87 aa, and to Escherichia coli hypothetical 8.8 kDa protein in ndh-mfd intergenic region precursor YcfR SW:YCFR_ECOLI (P75953) (85 aa) fasta scores: E(): 8.4e-06,38.4% id in 86 aa. (87 aa)
YPO3565Putative membrane protein; Similar to Escherichia coli hypothetical 15.2 kDa protein in rplM-hhoA intergenic region YhcB SW:YHCB_ECOLI (P39436) (134 aa) fasta scores: E(): 0, 80.3% id in 127 aa,and to Vibrio cholerae hypothetical protein Vc0567 TR:Q9KUF4 (EMBL:AE004142) (145 aa) fasta scores: E(): 2.7e-20, 45.8% id in 131 aa. (134 aa)
uspAUniversal stress protein A; Required for resistance to DNA-damaging agents. (148 aa)
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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