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yapG yapG yapF yapF YPO1672 YPO1672 yapC yapC yapA yapA YPO0309 YPO0309
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yapGPreviously sequenced, Yersinia pestis putative autotransporter protein YapG TR:CAC14226 (EMBL:AJ277630). Similar to Salmonella typhimurium pathogenicity island (SPI-3) protein MisL TR:Q9Z625 (EMBL:AF106566) (955 aa) fasta scores: E(): 0, 29.7% id in 966 aa. (994 aa)
yapFPreviously sequenced, Yersinia pestis putative autotransporter protein YapF TR:CAC14225 (EMBL:AJ277629). Similar to Acidovorax avenae subsp. avenae flagellin N1141-FLA1 TR:BAB16756 (EMBL:AB040139) (492 aa) fasta scores: E(): 0.0011, 20.8% id in 476 aa. (761 aa)
YPO1672Conserved hypothetical protein; Similar to Bordetella pertussis BapA protein TR:CAC14165 (EMBL:AJ277632) (903 aa) fasta scores: E(): 0,32.6% id in 915 aa, to Escherichia coli YchA protein TR:Q9JMS3 (EMBL:AP001918) (1371 aa) fasta scores: E(): 8.4e-25, 24.7% id in 1300 aa, and to the previously sequenced Yersinia pestis YapE protein TR:CAC14224 (EMBL:AJ277628) (1072 aa) fasta scores: E(): 1.5e-18, 23.9% id in 1160 aa. Similar to YPO0765 (82.4% identity in 1206 aa overlap) and YPO0309 (81.1% identity in 1199 aa overlap). (1268 aa)
yapCPutaive autotransporter protein; Previously sequenced as Yersinia pestis putative autotransporter protein YapC TR:CAC14222 (EMBL:AJ277626) (638 aa) fasta scores: E(): 0, 100.0% id in 638 aa, Similar to Escherichia coli invasion locus B protein TibA TR:Q9XD84 (EMBL:AF109215) (989 aa) fasta scores: E(): 0, 31.7% id in 666 aa. (638 aa)
yapAPreviously sequenced as Yersinia pestis putative autotransporter protein YapA TR:CAC14220 (EMBL:AJ277624) (1432 aa) fasta scores: E(): 0, 100.0% id in 1430 aa. C-terminal region similar to Escherichia coli glycoprotein autotransporter TibA TR:Q9XD84 (EMBL:AF109215) (989 aa) fasta scores: E(): 0, 27.6% id in 954 aa. Contains coiled-coiled domains, residues 330 to 369 and 399 to 480. (1430 aa)
YPO0309Putative exported protein; Similar to Bordetella pertussis putative autotransporter protein, BapA TR:CAC14165 (EMBL:AJ277632) (903 aa) fasta scores: E(): 0, 34.0% id in 915 aa. Also similar in part to Salmonella typhimurium ShdA TR:Q9XCJ4 (EMBL:AF140550) (2035 aa) fasta scores: E(): 1.1e-16, 24.7% id in 1382 aa. Also highly similar to Y. pestis CDSs YPO1672 and YPO0765. (1238 aa)
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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