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hmsH hmsH hmsF hmsF hmsR hmsR pgm pgm
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hmsHHaemin storage system, HmsH protein; Previously sequenced as Yersinia pestis hemin binding protein HmsH TR:Q56939 (EMBL:U22837) (822 aa) fasta scores: E(): 0, 100.0% id in 822 aa. Similar to Escherichia coli O157:H7 putative outer membrane protein YcdS TR:AAG55642 (EMBL:AE005302) (807 aa) fasta scores: E(): 0,40.3% id in 824 aa. (822 aa)
hmsFHaemin storage system, HmsF protein; Previously sequenced as Yersinia pestis hemin binding protein HmsF TR:Q56940 (EMBL:U22837) (673 aa) fasta scores: E(): 0, 99.7% id in 673 aa. Similar to Escherichia coli hypothetical lipoprotein YcdR SW:YCDR_ECOLI (P75906) (672 aa) fasta scores: E(): 0, 48.6% id in 662 aa. (673 aa)
hmsRHaemin storage system, HmsR protein; Previously sequenced as Yersinia pestis hemin binding protein HmsR TR:Q56941 (EMBL:U22837) (457 aa) fasta scores: E(): 0, 99.8% id in 444 aa. Similar to Escherichia coli hypothetical protein YcdQ SW:YCDQ_ECOLI (P75905) (441 aa) fasta scores: E(): 0, 66.0% id in 441 aa. There is a discrepancy in the start codon. (444 aa)
pgmPhosphoglucomutase; Similar to Escherichia coli phosphoglucomutase Pgm SW:PGMU_ECOLI (P36938) (546 aa) fasta scores: E(): 0, 82.8% id in 546 aa, and to Vibrio cholerae phosphoglucomutase VC2095 TR:Q9KQA5 (EMBL:AE004283) (548 aa) fasta scores: E(): 0, 69.6% id in 546 aa. (547 aa)
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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