6 items (Exophiala oligosperma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV06_07652	Uncharacterized protein. (821 aa)
	PV06_00026	Uncharacterized protein. (535 aa)
	PV06_08870	Peroxisomal membrane protein PEX16. (452 aa)
	PV06_01977	Uncharacterized protein. (378 aa)
	PV06_03186	Uncharacterized protein. (238 aa)
	PV06_08160	ABC transporter domain-containing protein. (715 aa)

Your Current Organism:

Exophiala oligosperma

NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV06_00026	PV06_01977	A0A0D2B4Y5	A0A0D2C8X7	Uncharacterized protein.	Uncharacterized protein.	0.999
PV06_00026	PV06_03186	A0A0D2B4Y5	A0A0D2DQE8	Uncharacterized protein.	Uncharacterized protein.	0.869
PV06_00026	PV06_07652	A0A0D2B4Y5	A0A0D2AK54	Uncharacterized protein.	Uncharacterized protein.	0.829
PV06_00026	PV06_08160	A0A0D2B4Y5	A0A0D2DVQ2	Uncharacterized protein.	ABC transporter domain-containing protein.	0.793
PV06_00026	PV06_08870	A0A0D2B4Y5	A0A0D2BNJ2	Uncharacterized protein.	Peroxisomal membrane protein PEX16.	0.866
PV06_01977	PV06_00026	A0A0D2C8X7	A0A0D2B4Y5	Uncharacterized protein.	Uncharacterized protein.	0.999
PV06_01977	PV06_03186	A0A0D2C8X7	A0A0D2DQE8	Uncharacterized protein.	Uncharacterized protein.	0.983
PV06_01977	PV06_07652	A0A0D2C8X7	A0A0D2AK54	Uncharacterized protein.	Uncharacterized protein.	0.861
PV06_01977	PV06_08160	A0A0D2C8X7	A0A0D2DVQ2	Uncharacterized protein.	ABC transporter domain-containing protein.	0.861
PV06_01977	PV06_08870	A0A0D2C8X7	A0A0D2BNJ2	Uncharacterized protein.	Peroxisomal membrane protein PEX16.	0.961
PV06_03186	PV06_00026	A0A0D2DQE8	A0A0D2B4Y5	Uncharacterized protein.	Uncharacterized protein.	0.869
PV06_03186	PV06_01977	A0A0D2DQE8	A0A0D2C8X7	Uncharacterized protein.	Uncharacterized protein.	0.983
PV06_03186	PV06_07652	A0A0D2DQE8	A0A0D2AK54	Uncharacterized protein.	Uncharacterized protein.	0.737
PV06_03186	PV06_08160	A0A0D2DQE8	A0A0D2DVQ2	Uncharacterized protein.	ABC transporter domain-containing protein.	0.732
PV06_03186	PV06_08870	A0A0D2DQE8	A0A0D2BNJ2	Uncharacterized protein.	Peroxisomal membrane protein PEX16.	0.807
PV06_07652	PV06_00026	A0A0D2AK54	A0A0D2B4Y5	Uncharacterized protein.	Uncharacterized protein.	0.829
PV06_07652	PV06_01977	A0A0D2AK54	A0A0D2C8X7	Uncharacterized protein.	Uncharacterized protein.	0.861
PV06_07652	PV06_03186	A0A0D2AK54	A0A0D2DQE8	Uncharacterized protein.	Uncharacterized protein.	0.737
PV06_07652	PV06_08160	A0A0D2AK54	A0A0D2DVQ2	Uncharacterized protein.	ABC transporter domain-containing protein.	0.903
PV06_07652	PV06_08870	A0A0D2AK54	A0A0D2BNJ2	Uncharacterized protein.	Peroxisomal membrane protein PEX16.	0.720