5 items (Exophiala oligosperma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV06_00736	Uncharacterized protein. (280 aa)
	PV06_08635	Uncharacterized protein. (270 aa)
	PV06_07051	Uncharacterized protein. (328 aa)
	PV06_11370	Uncharacterized protein. (269 aa)
	PV06_04936	Uncharacterized protein. (268 aa)

Your Current Organism:

Exophiala oligosperma

NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV06_00736	PV06_04936	A0A0D2CE33	A0A0D2DN37	Uncharacterized protein.	Uncharacterized protein.	0.692
PV06_00736	PV06_07051	A0A0D2CE33	A0A0D2ANL2	Uncharacterized protein.	Uncharacterized protein.	0.706
PV06_00736	PV06_11370	A0A0D2CE33	A0A0D2BFT9	Uncharacterized protein.	Uncharacterized protein.	0.689
PV06_04936	PV06_00736	A0A0D2DN37	A0A0D2CE33	Uncharacterized protein.	Uncharacterized protein.	0.692
PV06_04936	PV06_07051	A0A0D2DN37	A0A0D2ANL2	Uncharacterized protein.	Uncharacterized protein.	0.620
PV06_04936	PV06_08635	A0A0D2DN37	A0A0D2AF12	Uncharacterized protein.	Uncharacterized protein.	0.672
PV06_04936	PV06_11370	A0A0D2DN37	A0A0D2BFT9	Uncharacterized protein.	Uncharacterized protein.	0.833
PV06_07051	PV06_00736	A0A0D2ANL2	A0A0D2CE33	Uncharacterized protein.	Uncharacterized protein.	0.706
PV06_07051	PV06_04936	A0A0D2ANL2	A0A0D2DN37	Uncharacterized protein.	Uncharacterized protein.	0.620
PV06_07051	PV06_08635	A0A0D2ANL2	A0A0D2AF12	Uncharacterized protein.	Uncharacterized protein.	0.697
PV06_07051	PV06_11370	A0A0D2ANL2	A0A0D2BFT9	Uncharacterized protein.	Uncharacterized protein.	0.622
PV06_08635	PV06_04936	A0A0D2AF12	A0A0D2DN37	Uncharacterized protein.	Uncharacterized protein.	0.672
PV06_08635	PV06_07051	A0A0D2AF12	A0A0D2ANL2	Uncharacterized protein.	Uncharacterized protein.	0.697
PV06_08635	PV06_11370	A0A0D2AF12	A0A0D2BFT9	Uncharacterized protein.	Uncharacterized protein.	0.680
PV06_11370	PV06_00736	A0A0D2BFT9	A0A0D2CE33	Uncharacterized protein.	Uncharacterized protein.	0.689
PV06_11370	PV06_04936	A0A0D2BFT9	A0A0D2DN37	Uncharacterized protein.	Uncharacterized protein.	0.833
PV06_11370	PV06_07051	A0A0D2BFT9	A0A0D2ANL2	Uncharacterized protein.	Uncharacterized protein.	0.622
PV06_11370	PV06_08635	A0A0D2BFT9	A0A0D2AF12	Uncharacterized protein.	Uncharacterized protein.	0.680