39 items (Exophiala oligosperma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV06_01364	VPS9 domain-containing protein. (764 aa)
	PV06_01332	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (467 aa)
	PV06_00819	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (165 aa)
	PV06_00346	Uncharacterized protein. (219 aa)
	PV06_02969	Trafficking protein particle complex subunit BET3. (192 aa)
	PV06_05375	UDENN domain-containing protein. (948 aa)
	PV06_04822	Uncharacterized protein. (366 aa)
	PV06_06585	SH3 domain-containing protein. (393 aa)
	PV06_08630	Uncharacterized protein. (758 aa)
	PV06_03221	Uncharacterized protein. (604 aa)
	PV06_06876	Uncharacterized protein. (1121 aa)
	PV06_00508	GTP-binding protein ypt2. (210 aa)
	PV06_02260	Uncharacterized protein. (703 aa)
	PV06_09199	Uncharacterized protein. (161 aa)
	PV06_00507	Uncharacterized protein. (640 aa)
	PV06_02096	RIC1 domain-containing protein. (1047 aa)
	PV06_06398	Uncharacterized protein. (1412 aa)
	PV06_05731	Uncharacterized protein. (1342 aa)
	PV06_10559	MBOAT_2 domain-containing protein. (515 aa)
	PV06_11244	Uncharacterized protein. (212 aa)
	PV06_06875	Uncharacterized protein. (334 aa)
	PV06_07571	Sec2p domain-containing protein. (706 aa)
	PV06_08510	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1460 aa)
	PV06_08979	Uncharacterized protein. (456 aa)
	PV06_08894	ANK_REP_REGION domain-containing protein. (981 aa)
	PV06_10039	Uncharacterized protein. (1243 aa)
	PV06_09677	Ysc84 domain-containing protein. (558 aa)
	PV06_09523	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (188 aa)
	PV06_01850	GTP-binding protein ypt1. (201 aa)
	PV06_10117	Uncharacterized protein. (178 aa)
	PV06_10956	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. (267 aa)
	PV06_00694	Uncharacterized protein. (149 aa)
	PV06_00196	Uncharacterized protein. (251 aa)
	PV06_00044	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family. (508 aa)
	PV06_02469	Uncharacterized protein. (748 aa)
	PV06_05017	Uncharacterized protein. (1579 aa)
	PV06_06426	Uncharacterized protein. (209 aa)
	PV06_06821	Uncharacterized protein. (172 aa)
	PV06_08078	Uncharacterized protein. (777 aa)

Your Current Organism:

Exophiala oligosperma

NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV06_00044	PV06_00196	A0A0D2CBP0	A0A0D2CC65	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.608
PV06_00044	PV06_00346	A0A0D2CBP0	A0A0D2B5X8	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.608
PV06_00044	PV06_00507	A0A0D2CBP0	A0A0D2EIS8	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.869
PV06_00044	PV06_00508	A0A0D2CBP0	A0A0D2DZ30	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	GTP-binding protein ypt2.	0.869
PV06_00044	PV06_00694	A0A0D2CBP0	A0A0D2CE11	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.601
PV06_00044	PV06_00819	A0A0D2CBP0	A0A0D2B7J0	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.658
PV06_00044	PV06_01332	A0A0D2CBP0	A0A0D2B976	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.538
PV06_00044	PV06_01364	A0A0D2CBP0	A0A0D2B9A9	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	VPS9 domain-containing protein.	0.589
PV06_00044	PV06_01850	A0A0D2CBP0	A0A0D2DSW7	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	GTP-binding protein ypt1.	0.940
PV06_00044	PV06_02096	A0A0D2CBP0	A0A0D2EEQ8	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	RIC1 domain-containing protein.	0.636
PV06_00044	PV06_02260	A0A0D2CBP0	A0A0D2DVH9	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.743
PV06_00044	PV06_02469	A0A0D2CBP0	A0A0D2CAD6	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.589
PV06_00044	PV06_02969	A0A0D2CBP0	A0A0D2AXK6	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Trafficking protein particle complex subunit BET3.	0.639
PV06_00044	PV06_03221	A0A0D2CBP0	A0A0D2DPM2	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.749
PV06_00044	PV06_04822	A0A0D2CBP0	A0A0D2AVB9	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.697
PV06_00044	PV06_06426	A0A0D2CBP0	A0A0D2BZR1	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.945
PV06_00044	PV06_06821	A0A0D2CBP0	A0A0D2BUV7	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.648
PV06_00044	PV06_07571	A0A0D2CBP0	A0A0D2DB79	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Sec2p domain-containing protein.	0.734
PV06_00044	PV06_08630	A0A0D2CBP0	A0A0D2AF03	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	Uncharacterized protein.	0.664
PV06_00044	PV06_08894	A0A0D2CBP0	A0A0D2D7H3	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	ANK_REP_REGION domain-containing protein.	0.589