STRINGSTRING
cshA cshA obg obg ppiB ppiB rluD rluD KGL13508.1 KGL13508.1 KGL13433.1 KGL13433.1 engB engB rlmB rlmB fusA-2 fusA-2 rsfS rsfS rluA_2 rluA_2 pgm pgm KGL12369.1 KGL12369.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cshADEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
obgHypothetical protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. (453 aa)
ppiBPeptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (165 aa)
rluDPseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RluA family. (346 aa)
KGL13508.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
KGL13433.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (690 aa)
engBHypothetical protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. (187 aa)
rlmBRNA methyltransferase TrmH; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (234 aa)
fusA-2Elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology. (692 aa)
rsfSOligomerization domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
rluA_2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
pgmPhosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (509 aa)
KGL12369.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (78 aa)
Your Current Organism:
Helicobacter muridarum
NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1
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