(21 nodes) Mixed, incl. Peroxidase, and Rubredoxin network (Pseudomonas rhizosphaerae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIS15880.1	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family. (495 aa)
	AIS15881.1	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	AIS16103.1	Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
	AIS17189.1	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family. (472 aa)
	AIS17196.1	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family. (472 aa)
	AIS17387.1	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa)
	AIS17388.1	Dihydropteridine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family. (395 aa)
	AIS17389.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	AIS17627.1	Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. (187 aa)
	AIS17628.1	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	tpx	Peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. (166 aa)
	AIS17957.1	Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	fur	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (134 aa)
	AIS18308.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family. (147 aa)
	katE	Hydroperoxidase; Serves to protect cells from the toxic effects of hydrogen peroxide. (712 aa)
	AIS18936.1	Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (55 aa)
	AIS19024.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family. (109 aa)
	AIS19048.1	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	AIS19324.1	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family. (482 aa)
	AIS19615.1	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	AIS19616.1	Thioredoxin reductase; Catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)

Your Current Organism:

Pseudomonas rhizosphaerae

NCBI taxonomy Id: 216142
Other names: CECT 5726, DSM 16299, LMG 21640, LMG:21640, P. rhizosphaerae, Pseudomonas rhizosphaerae Peix et al. 2003, strain IH5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIS15880.1	AIS15881.1	LT40_00050	LT40_00055	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
AIS15880.1	AIS17627.1	LT40_00050	LT40_09555	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	0.471
AIS15880.1	AIS19048.1	LT40_00050	LT40_17275	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AIS15880.1	AIS19324.1	LT40_00050	LT40_18800	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	0.907
AIS15880.1	AIS19615.1	LT40_00050	LT40_20365	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AIS15880.1	AIS19616.1	LT40_00050	LT40_20370	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	Thioredoxin reductase; Catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AIS15880.1	katE	LT40_00050	LT40_16000	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	Hydroperoxidase; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.911
AIS15881.1	AIS15880.1	LT40_00055	LT40_00050	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	0.734
AIS16103.1	AIS17189.1	LT40_01260	LT40_07120	Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	0.579
AIS16103.1	AIS17196.1	LT40_01260	LT40_07165	Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	0.587
AIS16103.1	AIS18936.1	LT40_01260	LT40_16690	Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AIS17189.1	AIS16103.1	LT40_07120	LT40_01260	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AIS17189.1	AIS17196.1	LT40_07120	LT40_07165	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	0.995
AIS17189.1	AIS17388.1	LT40_07120	LT40_08250	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	Dihydropteridine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.	0.711
AIS17189.1	AIS18308.1	LT40_07120	LT40_13320	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.	0.711
AIS17189.1	AIS18936.1	LT40_07120	LT40_16690	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AIS17189.1	AIS19616.1	LT40_07120	LT40_20370	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	Thioredoxin reductase; Catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
AIS17189.1	fur	LT40_07120	LT40_13240	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.	0.432
AIS17196.1	AIS16103.1	LT40_07165	LT40_01260	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AIS17196.1	AIS17189.1	LT40_07165	LT40_07120	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	rubredoxin-NAD(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.	0.995