(5 nodes) Mixed, incl. Succinylglutamate desuccinylase/aspartoacylase, and Solute-binding protein family 3, conserved site network (Pseudomonas rhizosphaerae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIS16854.1	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	AIS16855.1	Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
	AIS16856.1	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AIS16857.1	Amino acid ABC transporter permease; With HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	AIS16858.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (260 aa)

Your Current Organism:

Pseudomonas rhizosphaerae

NCBI taxonomy Id: 216142
Other names: CECT 5726, DSM 16299, LMG 21640, LMG:21640, P. rhizosphaerae, Pseudomonas rhizosphaerae Peix et al. 2003, strain IH5

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIS16854.1	AIS16855.1	LT40_05275	LT40_05280	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
AIS16854.1	AIS16856.1	LT40_05275	LT40_05285	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AIS16854.1	AIS16857.1	LT40_05275	LT40_05290	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AIS16854.1	AIS16858.1	LT40_05275	LT40_05295	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.975
AIS16855.1	AIS16854.1	LT40_05280	LT40_05275	Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
AIS16855.1	AIS16856.1	LT40_05280	LT40_05285	Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
AIS16855.1	AIS16857.1	LT40_05280	LT40_05290	Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
AIS16855.1	AIS16858.1	LT40_05280	LT40_05295	Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.666
AIS16856.1	AIS16854.1	LT40_05285	LT40_05275	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AIS16856.1	AIS16855.1	LT40_05285	LT40_05280	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
AIS16856.1	AIS16857.1	LT40_05285	LT40_05290	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AIS16856.1	AIS16858.1	LT40_05285	LT40_05295	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.980
AIS16857.1	AIS16854.1	LT40_05290	LT40_05275	Amino acid ABC transporter permease; With HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AIS16857.1	AIS16855.1	LT40_05290	LT40_05280	Amino acid ABC transporter permease; With HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
AIS16857.1	AIS16856.1	LT40_05290	LT40_05285	Amino acid ABC transporter permease; With HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AIS16857.1	AIS16858.1	LT40_05290	LT40_05295	Amino acid ABC transporter permease; With HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.982
AIS16858.1	AIS16854.1	LT40_05295	LT40_05275	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AIS16858.1	AIS16855.1	LT40_05295	LT40_05280	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AIS16858.1	AIS16856.1	LT40_05295	LT40_05285	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AIS16858.1	AIS16857.1	LT40_05295	LT40_05290	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter permease; With HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982