(9 nodes) PAS fold network (Pseudomonas rhizosphaerae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIS17048.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	AIS17758.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (656 aa)
	AIS19702.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	AIS19122.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (709 aa)
	AIS18931.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	AIS18571.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	AIS18260.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (982 aa)
	AIS16644.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (671 aa)
	AIS17018.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (820 aa)

Your Current Organism:

Pseudomonas rhizosphaerae

NCBI taxonomy Id: 216142
Other names: CECT 5726, DSM 16299, LMG 21640, LMG:21640, P. rhizosphaerae, Pseudomonas rhizosphaerae Peix et al. 2003, strain IH5

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIS16644.1	AIS17758.1	LT40_04160	LT40_10290	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AIS16644.1	AIS19122.1	LT40_04160	LT40_17650	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AIS17018.1	AIS17758.1	LT40_06160	LT40_10290	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AIS17018.1	AIS18260.1	LT40_06160	LT40_13055	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
AIS17018.1	AIS19122.1	LT40_06160	LT40_17650	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AIS17018.1	AIS19702.1	LT40_06160	LT40_20850	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AIS17048.1	AIS17758.1	LT40_06320	LT40_10290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AIS17758.1	AIS16644.1	LT40_10290	LT40_04160	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AIS17758.1	AIS17018.1	LT40_10290	LT40_06160	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AIS17758.1	AIS17048.1	LT40_10290	LT40_06320	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AIS17758.1	AIS18260.1	LT40_10290	LT40_13055	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
AIS17758.1	AIS18571.1	LT40_10290	LT40_14720	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
AIS17758.1	AIS18931.1	LT40_10290	LT40_16665	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
AIS17758.1	AIS19122.1	LT40_10290	LT40_17650	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AIS17758.1	AIS19702.1	LT40_10290	LT40_20850	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AIS18260.1	AIS17018.1	LT40_13055	LT40_06160	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
AIS18260.1	AIS17758.1	LT40_13055	LT40_10290	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
AIS18260.1	AIS19122.1	LT40_13055	LT40_17650	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AIS18571.1	AIS17758.1	LT40_14720	LT40_10290	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
AIS18931.1	AIS17758.1	LT40_16665	LT40_10290	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525