29 items (Metschnikowia aff.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MPUL0A04900	F-box and leucine-rich repeat protein 10/11. (569 aa)
	MPUL0B06440	Nucleoporin or Nuclear pore complex subunit NUP214/Nup159. (1179 aa)
	MPUL0A05080	CTD nuclear envelope phosphatase 1. (359 aa)
	METSCH_A01970	Uncharacterized protein. (322 aa)
	MPUL0B09680	Serine/threonine-protein kinase RIM15. (1652 aa)
	MPUL0B06940	Phosphatidic acid phosphatase. (888 aa)
	MPUL0B11320	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	MPUL0D04600	Histone H2A; Belongs to the histone H2A family. (130 aa)
	METSCH_E02290	Uncharacterized protein. (278 aa)
	METSCH_E02270	Uncharacterized protein. (300 aa)
	MPUL0C05670	PA14 domain-containing protein. (2962 aa)
	METSCH_E02260	Uncharacterized protein. (243 aa)
	MPUL0D03860	F-box domain-containing protein. (326 aa)
	MPUL0F00410	Serine/threonine-protein kinase. (683 aa)
	MPUL0D03880	mRNA stability protein; Plays an essential role in initiation of the G0 program by preventing the degradation of specific nutrient-regulated mRNAs via the 5'-3' mRNA decay pathway. (135 aa)
	METSCH_E06480	Uncharacterized protein. (1233 aa)
	MPUL0G00270	Spo7-like protein. (408 aa)
	MPUL0C06760	Pore complex protein Nup62. (910 aa)
	METSCH_E02300	Uncharacterized protein. (298 aa)
	MPUL0D04620	Histone H2B; Belongs to the histone H2B family. (130 aa)
	MPUL0F05070	Structural maintenance of chromosomes protein. (1487 aa)
	MPUL0E02350	GRASP55/65 PDZ-like domain-containing protein. (875 aa)
	METSCH_E02280	Uncharacterized protein. (306 aa)
	MPUL0F04790	Nucleosome assembly protein NAP; Belongs to the nucleosome assembly protein (NAP) family. (313 aa)
	MPUL0B04130	Histone H2A; Belongs to the histone H2A family. (133 aa)
	MPUL0B09220	Nucleoporin NUP42. (549 aa)
	MPUL0C07940	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (1071 aa)
	MPUL0E02100	Ras-related protein Rab-1A. (206 aa)
	MPUL0B02340	Nucleoporin NUP1. (1063 aa)

Your Current Organism:

Metschnikowia aff.

NCBI taxonomy Id: 2163413
Other names: M. aff. pulcherrima, Metschnikowia aff. pulcherrima

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
METSCH_A01970	METSCH_E06480	A0A4P6XGG5	A0A4P6XTC5	Uncharacterized protein.	Uncharacterized protein.	0.996
METSCH_A01970	MPUL0B02340	A0A4P6XGG5	A0A4P6XM14	Uncharacterized protein.	Nucleoporin NUP1.	0.669
METSCH_A01970	MPUL0B06440	A0A4P6XGG5	A0A4P6XJG7	Uncharacterized protein.	Nucleoporin or Nuclear pore complex subunit NUP214/Nup159.	0.703
METSCH_A01970	MPUL0B09220	A0A4P6XGG5	A0A4V1AE23	Uncharacterized protein.	Nucleoporin NUP42.	0.669
METSCH_A01970	MPUL0C06760	A0A4P6XGG5	A0A4P6XMT4	Uncharacterized protein.	Pore complex protein Nup62.	0.996
METSCH_E02260	MPUL0E02100	A0A4P6XS88	A0A4V1AEP9	Uncharacterized protein.	Ras-related protein Rab-1A.	0.649
METSCH_E02260	MPUL0E02350	A0A4P6XS88	A0A4P6XUU5	Uncharacterized protein.	GRASP55/65 PDZ-like domain-containing protein.	0.741
METSCH_E02270	MPUL0E02100	A0A4P6XRB6	A0A4V1AEP9	Uncharacterized protein.	Ras-related protein Rab-1A.	0.649
METSCH_E02270	MPUL0E02350	A0A4P6XRB6	A0A4P6XUU5	Uncharacterized protein.	GRASP55/65 PDZ-like domain-containing protein.	0.741
METSCH_E02280	MPUL0E02100	A0A4P6XVA1	A0A4V1AEP9	Uncharacterized protein.	Ras-related protein Rab-1A.	0.649
METSCH_E02280	MPUL0E02350	A0A4P6XVA1	A0A4P6XUU5	Uncharacterized protein.	GRASP55/65 PDZ-like domain-containing protein.	0.741
METSCH_E02290	MPUL0E02100	A0A4P6XR12	A0A4V1AEP9	Uncharacterized protein.	Ras-related protein Rab-1A.	0.649
METSCH_E02290	MPUL0E02350	A0A4P6XR12	A0A4P6XUU5	Uncharacterized protein.	GRASP55/65 PDZ-like domain-containing protein.	0.741
METSCH_E02300	MPUL0E02100	A0A4V1AEQ1	A0A4V1AEP9	Uncharacterized protein.	Ras-related protein Rab-1A.	0.649
METSCH_E02300	MPUL0E02350	A0A4V1AEQ1	A0A4P6XUU5	Uncharacterized protein.	GRASP55/65 PDZ-like domain-containing protein.	0.741
METSCH_E06480	METSCH_A01970	A0A4P6XTC5	A0A4P6XGG5	Uncharacterized protein.	Uncharacterized protein.	0.996
METSCH_E06480	MPUL0B02340	A0A4P6XTC5	A0A4P6XM14	Uncharacterized protein.	Nucleoporin NUP1.	0.999
METSCH_E06480	MPUL0B06440	A0A4P6XTC5	A0A4P6XJG7	Uncharacterized protein.	Nucleoporin or Nuclear pore complex subunit NUP214/Nup159.	0.999
METSCH_E06480	MPUL0B09220	A0A4P6XTC5	A0A4V1AE23	Uncharacterized protein.	Nucleoporin NUP42.	0.999
METSCH_E06480	MPUL0C05670	A0A4P6XTC5	A0A4P6XS18	Uncharacterized protein.	PA14 domain-containing protein.	0.996