STRINGSTRING
BZ172_20435 BZ172_20435 gsiB gsiB gsiC gsiC gsiD gsiD ddpX ddpX BZ172_26105 BZ172_26105 ddpB ddpB ddpC ddpC gsiA_4 gsiA_4 BZ172_26125 BZ172_26125 BZ172_27275 BZ172_27275 oppF oppF oppD oppD oppC oppC oppB oppB BZ172_28175 BZ172_28175 dppA_1 dppA_1 dppB dppB dppC dppC dppD dppD dppF dppF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BZ172_20435Unannotated protein; Belongs to the ABC transporter superfamily. (623 aa)
gsiBUnannotated protein. (512 aa)
gsiCUnannotated protein. (306 aa)
gsiDUnannotated protein. (303 aa)
ddpXUnannotated protein; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (193 aa)
BZ172_26105Unannotated protein. (516 aa)
ddpBUnannotated protein. (340 aa)
ddpCUnannotated protein. (298 aa)
gsiA_4Unannotated protein; Belongs to the ABC transporter superfamily. (328 aa)
BZ172_26125Unannotated protein; Belongs to the ABC transporter superfamily. (229 aa)
BZ172_27275Unannotated protein. (537 aa)
oppFUnannotated protein; Belongs to the ABC transporter superfamily. (334 aa)
oppDUnannotated protein; Belongs to the ABC transporter superfamily. (337 aa)
oppCUnannotated protein. (302 aa)
oppBUnannotated protein. (306 aa)
BZ172_28175Unannotated protein. (558 aa)
dppA_1Unannotated protein. (535 aa)
dppBUnannotated protein. (339 aa)
dppCUnannotated protein. (300 aa)
dppDUnannotated protein; Belongs to the ABC transporter superfamily. (327 aa)
dppFUnannotated protein; Belongs to the ABC transporter superfamily. (334 aa)
Your Current Organism:
Shigella sonnei
NCBI taxonomy Id: 216599
Other names: S. sonnei 53G, Shigella sonnei 53G, Shigella sonnei str. 53G
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