STRINGSTRING
GCA_000283715_01707 GCA_000283715_01707 tppB tppB psuT psuT nupC nupC GCA_000283715_03539 GCA_000283715_03539 speC_2 speC_2 dtpB dtpB nhaK nhaK yjcD_2 yjcD_2 yjdL yjdL cadA_1 cadA_1 GCA_000283715_04858 GCA_000283715_04858 GCA_000283715_04859 GCA_000283715_04859 GCA_000283715_04860 GCA_000283715_04860 GCA_000283715_04861 GCA_000283715_04861 GCA_000283715_04862 GCA_000283715_04862 GCA_000283715_04863 GCA_000283715_04863 GCA_000283715_04865 GCA_000283715_04865 GCA_000283715_04866 GCA_000283715_04866 GCA_000283715_04867 GCA_000283715_04867
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_000283715_01707Unannotated protein. (442 aa)
tppBUnannotated protein; Proton-dependent permease that transports di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpA subfamily. (500 aa)
psuTUnannotated protein; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. (416 aa)
nupCUnannotated protein; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. (400 aa)
GCA_000283715_03539Unannotated protein. (77 aa)
speC_2Unannotated protein. (648 aa)
dtpBUnannotated protein; Proton-dependent permease that transports di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpB subfamily. (489 aa)
nhaKUnannotated protein; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (549 aa)
yjcD_2Unannotated protein. (449 aa)
yjdLUnannotated protein. (485 aa)
cadA_1Unannotated protein. (85 aa)
GCA_000283715_04858Unannotated protein. (272 aa)
GCA_000283715_04859Unannotated protein. (100 aa)
GCA_000283715_04860Unannotated protein. (284 aa)
GCA_000283715_04861Unannotated protein. (301 aa)
GCA_000283715_04862Unannotated protein. (121 aa)
GCA_000283715_04863Unannotated protein. (342 aa)
GCA_000283715_04865Unannotated protein. (100 aa)
GCA_000283715_04866Unannotated protein. (272 aa)
GCA_000283715_04867Unannotated protein. (442 aa)
Your Current Organism:
Shigella sonnei
NCBI taxonomy Id: 216599
Other names: S. sonnei 53G, Shigella sonnei 53G, Shigella sonnei str. 53G
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