13 items (Shigella sonnei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fldA	Unannotated protein; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. (176 aa)
	BZ172_19360	Unannotated protein. (120 aa)
	ybfF	Unannotated protein. (254 aa)
	GCA_000283715_02577	Unannotated protein. (40 aa)
	atoD_1	Unannotated protein. (172 aa)
	atoA	Unannotated protein. (216 aa)
	atoE	Unannotated protein. (440 aa)
	livF	Unannotated protein; Belongs to the ABC transporter superfamily. (237 aa)
	livG	Unannotated protein. (255 aa)
	livM	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. (425 aa)
	livH	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. (308 aa)
	livK	Unannotated protein. (369 aa)
	livJ	Unannotated protein. (367 aa)

Your Current Organism:

Shigella sonnei

NCBI taxonomy Id: 216599
Other names: S. sonnei 53G, Shigella sonnei 53G, Shigella sonnei str. 53G

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BZ172_19360	fldA	GCA_000283715_00658	GCA_000283715_00657	Unannotated protein.	Unannotated protein; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.	0.742
BZ172_19360	ybfF	GCA_000283715_00658	GCA_000283715_00659	Unannotated protein.	Unannotated protein.	0.606
GCA_000283715_02577	atoA	GCA_000283715_02577	GCA_000283715_02579	Unannotated protein.	Unannotated protein.	0.994
GCA_000283715_02577	atoD_1	GCA_000283715_02577	GCA_000283715_02578	Unannotated protein.	Unannotated protein.	0.705
GCA_000283715_02577	atoE	GCA_000283715_02577	GCA_000283715_02580	Unannotated protein.	Unannotated protein.	0.788
atoA	GCA_000283715_02577	GCA_000283715_02579	GCA_000283715_02577	Unannotated protein.	Unannotated protein.	0.994
atoA	atoD_1	GCA_000283715_02579	GCA_000283715_02578	Unannotated protein.	Unannotated protein.	0.999
atoA	atoE	GCA_000283715_02579	GCA_000283715_02580	Unannotated protein.	Unannotated protein.	0.930
atoA	livF	GCA_000283715_02579	GCA_000283715_04029	Unannotated protein.	Unannotated protein; Belongs to the ABC transporter superfamily.	0.481
atoD_1	GCA_000283715_02577	GCA_000283715_02578	GCA_000283715_02577	Unannotated protein.	Unannotated protein.	0.705
atoD_1	atoA	GCA_000283715_02578	GCA_000283715_02579	Unannotated protein.	Unannotated protein.	0.999
atoD_1	atoE	GCA_000283715_02578	GCA_000283715_02580	Unannotated protein.	Unannotated protein.	0.923
atoE	GCA_000283715_02577	GCA_000283715_02580	GCA_000283715_02577	Unannotated protein.	Unannotated protein.	0.788
atoE	atoA	GCA_000283715_02580	GCA_000283715_02579	Unannotated protein.	Unannotated protein.	0.930
atoE	atoD_1	GCA_000283715_02580	GCA_000283715_02578	Unannotated protein.	Unannotated protein.	0.923
fldA	BZ172_19360	GCA_000283715_00657	GCA_000283715_00658	Unannotated protein; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.	Unannotated protein.	0.742
fldA	ybfF	GCA_000283715_00657	GCA_000283715_00659	Unannotated protein; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.	Unannotated protein.	0.434
livF	atoA	GCA_000283715_04029	GCA_000283715_02579	Unannotated protein; Belongs to the ABC transporter superfamily.	Unannotated protein.	0.481
livF	livG	GCA_000283715_04029	GCA_000283715_04030	Unannotated protein; Belongs to the ABC transporter superfamily.	Unannotated protein.	0.996
livF	livH	GCA_000283715_04029	GCA_000283715_04032	Unannotated protein; Belongs to the ABC transporter superfamily.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.996