STRINGSTRING
bioH bioH thiH thiH metF metF metB metB metJ metJ fpr fpr yihT yihT yihU yihU rbsK_1 rbsK_1 metE metE metR metR yigL yigL cyaY cyaY BZ172_10920 BZ172_10920 cysE_4 cysE_4 BZ172_09535 BZ172_09535 gor gor ggt ggt asd asd gntY gntY accC accC sspA sspA BZ172_07975 BZ172_07975 yhaM yhaM GCA_000283715_03686 GCA_000283715_03686 gsp_2 gsp_2 BZ172_06795 BZ172_06795 yghU yghU gsp_1 gsp_1 gshB gshB metK metK ygfH ygfH csdE csdE csdA_1 csdA_1 cysJ cysJ cysI cysI cysH cysH cysD cysD cysN cysN cysC cysC gshA gshA yfhO yfhO iscU iscU iscA iscA hscB hscB hscA hscA iscX iscX sseA sseA cysM cysM BZ172_02930 BZ172_02930 cysZ cysZ accD accD yfcG yfcG yfcF yfcF pta pta ackA ackA minD_3 minD_3 thiM thiM thiD thiD cysE_1 cysE_1 BZ172_28300 BZ172_28300 yciA yciA fabI fabI gstB gstB bioD2 bioD2 gstA gstA BZ172_24930 BZ172_24930 grxD grxD sufE sufE sufS sufS sufD sufD sufC sufC ynhE ynhE sufA sufA ynjE ynjE thiK thiK grxB grxB yliJ yliJ bioD bioD bioC bioC bioF bioF bioB bioB bioA bioA sucB sucB lipA lipA citD citD citE citE BZ172_18945 BZ172_18945 folD folD tesB tesB cof cof thiI thiI dxs dxs iolS iolS thiL thiL tauD tauD yaeR yaeR accA accA mtnN mtnN yadR yadR cysQ cysQ yjfC yjfC BZ172_13910 BZ172_13910 BZ172_13820 BZ172_13820 GCA_000283715_04793 GCA_000283715_04793 metH metH metA metA thiC thiC thiE thiE thiF_2 thiF_2 thiS thiS thiG thiG
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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bioHUnannotated protein; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters. (256 aa)
thiHUnannotated protein. (377 aa)
metFUnannotated protein; Belongs to the methylenetetrahydrofolate reductase family. (296 aa)
metBUnannotated protein. (386 aa)
metJUnannotated protein; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis; Belongs to the MetJ family. (105 aa)
fprUnannotated protein. (248 aa)
yihTUnannotated protein; Cleaves 6-deoxy-6-sulfo-D-fructose 1-phosphate (SFP) to form dihydroxyacetone phosphate (DHAP) and 3-sulfolactaldehyde (SLA). Belongs to the aldolase LacD family. (295 aa)
yihUUnannotated protein; Reduces 3-sulfolactaldehyde (SLA) to 2,3-dihydroxypropane 1- sulfonate (DHPS); Belongs to the HIBADH-related family. 3-sulfolactaldehyde reductase subfamily. (292 aa)
rbsK_1Unannotated protein; Belongs to the carbohydrate kinase PfkB family. (267 aa)
metEUnannotated protein; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. (753 aa)
metRUnannotated protein; Belongs to the LysR transcriptional regulatory family. (317 aa)
yigLUnannotated protein. (266 aa)
cyaYUnannotated protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. (106 aa)
BZ172_10920Unannotated protein. (202 aa)
cysE_4Unannotated protein; Belongs to the transferase hexapeptide repeat family. (273 aa)
BZ172_09535Unannotated protein. (45 aa)
gorUnannotated protein. (450 aa)
ggtUnannotated protein. (499 aa)
asdUnannotated protein; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (367 aa)
gntYUnannotated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. (191 aa)
accCUnannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (449 aa)
sspAUnannotated protein; Belongs to the GST superfamily. (212 aa)
BZ172_07975Unannotated protein; Belongs to the BolA/IbaG family. (89 aa)
yhaMUnannotated protein; Belongs to the UPF0597 family. (436 aa)
GCA_000283715_03686Unannotated protein. (337 aa)
gsp_2Unannotated protein. (386 aa)
BZ172_06795Unannotated protein. (395 aa)
yghUUnannotated protein. (288 aa)
gsp_1Unannotated protein. (619 aa)
gshBUnannotated protein; Belongs to the prokaryotic GSH synthase family. (316 aa)
metKUnannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (384 aa)
ygfHUnannotated protein. (492 aa)
csdEUnannotated protein. (147 aa)
csdA_1Unannotated protein. (401 aa)
cysJUnannotated protein; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. Belongs to the NADPH-dependent sulphite reductase flavoprotein subunit CysJ family. In the N-terminal section; belongs to the flavodoxin family. (599 aa)
cysIUnannotated protein; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (570 aa)
cysHUnannotated protein; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. (244 aa)
cysDUnannotated protein. (302 aa)
cysNUnannotated protein; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (475 aa)
cysCUnannotated protein; Catalyzes the synthesis of activated sulfate. (201 aa)
gshAUnannotated protein; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. (518 aa)
yfhOUnannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur and selenium atoms from cysteine and selenocysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. Also functions as a selenium delivery protein in the pathway for the biosynthesis of selenophosphate. (404 aa)
iscUUnannotated protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. (128 aa)
iscAUnannotated protein; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system TrxA/TrxB. (107 aa)
hscBUnannotated protein; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. (171 aa)
hscAUnannotated protein; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Involved in the maturation of IscU. (616 aa)
iscXUnannotated protein. (66 aa)
sseAUnannotated protein. (281 aa)
cysMUnannotated protein; Belongs to the cysteine synthase/cystathionine beta- synthase family. (303 aa)
BZ172_02930Unannotated protein; Belongs to the cysteine synthase/cystathionine beta- synthase family. (323 aa)
cysZUnannotated protein; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family. (253 aa)
accDUnannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (304 aa)
yfcGUnannotated protein; Belongs to the GST superfamily. (215 aa)
yfcFUnannotated protein. (214 aa)
ptaUnannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. (714 aa)
ackAUnannotated protein; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (400 aa)
minD_3Unannotated protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (369 aa)
thiMUnannotated protein; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. (262 aa)
thiDUnannotated protein. (266 aa)
cysE_1Unannotated protein; Belongs to the transferase hexapeptide repeat family. (162 aa)
BZ172_28300Unannotated protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. (238 aa)
yciAUnannotated protein. (132 aa)
fabIUnannotated protein. (262 aa)
gstBUnannotated protein. (205 aa)
bioD2Unannotated protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. Belongs to the dethiobiotin synthetase family. (231 aa)
gstAUnannotated protein. (45 aa)
BZ172_24930Unannotated protein. (150 aa)
grxDUnannotated protein; Belongs to the glutaredoxin family. Monothiol subfamily. (115 aa)
sufEUnannotated protein; Participates in cysteine desulfuration mediated by SufS. Cysteine desulfuration mobilizes sulfur from L-cysteine to yield L- alanine and constitutes an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Functions as a sulfur acceptor for SufS, by mediating the direct transfer of the sulfur atom from the S-sulfanylcysteine of SufS, an intermediate product of cysteine desulfuration process; Belongs to the SufE family. (138 aa)
sufSUnannotated protein; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo. (406 aa)
sufDUnannotated protein. (423 aa)
sufCUnannotated protein. (248 aa)
ynhEUnannotated protein. (495 aa)
sufAUnannotated protein; Belongs to the HesB/IscA family. (122 aa)
ynjEUnannotated protein. (435 aa)
thiKUnannotated protein; Catalyzes the phosphorylation of thiamine to thiamine phosphate. (274 aa)
grxBUnannotated protein. (215 aa)
yliJUnannotated protein; Belongs to the GST superfamily. (192 aa)
bioDUnannotated protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. Belongs to the dethiobiotin synthetase family. (222 aa)
bioCUnannotated protein; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. (251 aa)
bioFUnannotated protein; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. (384 aa)
bioBUnannotated protein; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (346 aa)
bioAUnannotated protein; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (429 aa)
sucBUnannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (405 aa)
lipAUnannotated protein; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (321 aa)
citDUnannotated protein; Covalent carrier of the coenzyme of citrate lyase. (98 aa)
citEUnannotated protein; Belongs to the HpcH/HpaI aldolase family. (302 aa)
BZ172_18945Unannotated protein. (510 aa)
folDUnannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (288 aa)
tesBUnannotated protein. (286 aa)
cofUnannotated protein; Catalyzes the hydrolysis of 4-amino-2-methyl-5- hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2-methyl-5- hydroxymethylpyrimidine phosphate (HMP-P). (272 aa)
thiIUnannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. (482 aa)
dxsUnannotated protein; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (620 aa)
iolSUnannotated protein. (324 aa)
thiLUnannotated protein; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. (325 aa)
tauDUnannotated protein. (283 aa)
yaeRUnannotated protein. (129 aa)
accAUnannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (319 aa)
mtnNUnannotated protein; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Also cleaves 5'-deoxyadenosine, a toxic by-product of radical S-adenosylmethionine (SAM) enzymes, into 5-deoxyribose and adenine. Thus, is required for in vivo function of the radical SAM enzymes biotin synthase and lipoic acid synthase, that are inhibited by 5'-deoxyadenosine accumulation. Belongs to the PNP/UDP phosphorylase [...] (232 aa)
yadRUnannotated protein; Required for insertion of 4Fe-4S clusters for at least IspG. (114 aa)
cysQUnannotated protein; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family. (246 aa)
yjfCUnannotated protein. (387 aa)
BZ172_13910Unannotated protein. (120 aa)
BZ172_13820Unannotated protein. (661 aa)
GCA_000283715_04793Unannotated protein. (66 aa)
metHUnannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1227 aa)
metAUnannotated protein; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine. (309 aa)
thiCUnannotated protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. (631 aa)
thiEUnannotated protein; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. (211 aa)
thiF_2Unannotated protein. (251 aa)
thiSUnannotated protein. (66 aa)
thiGUnannotated protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. (256 aa)
Your Current Organism:
Shigella sonnei
NCBI taxonomy Id: 216599
Other names: S. sonnei 53G, Shigella sonnei 53G, Shigella sonnei str. 53G
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