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sapD sapD sapF sapF oppF oppF oppD oppD gsiA_1 gsiA_1 yojI yojI dtpB dtpB dppD dppD smbA smbA sgrR sgrR dtpD dtpD tolQ tolQ tolA tolA BZ172_20435 BZ172_20435 cudC cudC tppB tppB gsiA_4 gsiA_4 BZ172_26125 BZ172_26125 abgT_1 abgT_1 BZ172_27225 BZ172_27225 dppF dppF yjdL yjdL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sapDUnannotated protein; Belongs to the ABC transporter superfamily. (330 aa)
sapFUnannotated protein. (268 aa)
oppFUnannotated protein; Belongs to the ABC transporter superfamily. (334 aa)
oppDUnannotated protein; Belongs to the ABC transporter superfamily. (337 aa)
gsiA_1Unannotated protein; Belongs to the ABC transporter superfamily. (529 aa)
yojIUnannotated protein. (547 aa)
dtpBUnannotated protein; Proton-dependent permease that transports di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpB subfamily. (489 aa)
dppDUnannotated protein; Belongs to the ABC transporter superfamily. (327 aa)
smbAUnannotated protein. (406 aa)
sgrRUnannotated protein. (566 aa)
dtpDUnannotated protein; Probable proton-dependent permease that transports dipeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpD subfamily. (493 aa)
tolQUnannotated protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. Required, with TolR, for the proton motive force-dependent activation of TolA and for TolA-Pal interaction. (230 aa)
tolAUnannotated protein. (410 aa)
BZ172_20435Unannotated protein; Belongs to the ABC transporter superfamily. (623 aa)
cudCUnannotated protein. (573 aa)
tppBUnannotated protein; Proton-dependent permease that transports di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpA subfamily. (500 aa)
gsiA_4Unannotated protein; Belongs to the ABC transporter superfamily. (328 aa)
BZ172_26125Unannotated protein; Belongs to the ABC transporter superfamily. (229 aa)
abgT_1Unannotated protein. (366 aa)
BZ172_27225Unannotated protein. (138 aa)
dppFUnannotated protein; Belongs to the ABC transporter superfamily. (334 aa)
yjdLUnannotated protein. (485 aa)
Your Current Organism:
Shigella sonnei
NCBI taxonomy Id: 216599
Other names: S. sonnei 53G, Shigella sonnei 53G, Shigella sonnei str. 53G
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