(6 nodes) Arginine catabolic process to glutamate network (Shigella sonnei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	astB	Unannotated protein; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2). (447 aa)
	astD_2	Unannotated protein. (153 aa)
	astD_1	Unannotated protein; Belongs to the aldehyde dehydrogenase family. (333 aa)
	astA	Unannotated protein; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine. (344 aa)
	astC	Unannotated protein; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily. (406 aa)
	astE	Unannotated protein; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily. (322 aa)

Your Current Organism:

Shigella sonnei

NCBI taxonomy Id: 216599
Other names: S. sonnei 53G, Shigella sonnei 53G, Shigella sonnei str. 53G

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
astA	astB	GCA_000283715_01531	GCA_000283715_01534	Unannotated protein; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.	Unannotated protein; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).	0.999
astA	astC	GCA_000283715_01531	GCA_000283715_01530	Unannotated protein; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.	Unannotated protein; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.	0.983
astA	astD_1	GCA_000283715_01531	GCA_000283715_01532	Unannotated protein; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.990
astA	astD_2	GCA_000283715_01531	GCA_000283715_01533	Unannotated protein; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.	Unannotated protein.	0.990
astA	astE	GCA_000283715_01531	GCA_000283715_01535	Unannotated protein; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.	Unannotated protein; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.	0.984
astB	astA	GCA_000283715_01534	GCA_000283715_01531	Unannotated protein; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).	Unannotated protein; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.	0.999
astB	astC	GCA_000283715_01534	GCA_000283715_01530	Unannotated protein; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).	Unannotated protein; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.	0.994
astB	astD_1	GCA_000283715_01534	GCA_000283715_01532	Unannotated protein; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.989
astB	astD_2	GCA_000283715_01534	GCA_000283715_01533	Unannotated protein; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).	Unannotated protein.	0.992
astB	astE	GCA_000283715_01534	GCA_000283715_01535	Unannotated protein; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).	Unannotated protein; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.	0.993
astC	astA	GCA_000283715_01530	GCA_000283715_01531	Unannotated protein; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.	Unannotated protein; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.	0.983
astC	astB	GCA_000283715_01530	GCA_000283715_01534	Unannotated protein; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.	Unannotated protein; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).	0.994
astC	astD_1	GCA_000283715_01530	GCA_000283715_01532	Unannotated protein; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	0.982
astC	astD_2	GCA_000283715_01530	GCA_000283715_01533	Unannotated protein; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.	Unannotated protein.	0.980
astC	astE	GCA_000283715_01530	GCA_000283715_01535	Unannotated protein; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.	Unannotated protein; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.	0.954
astD_1	astA	GCA_000283715_01532	GCA_000283715_01531	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	Unannotated protein; Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.	0.990
astD_1	astB	GCA_000283715_01532	GCA_000283715_01534	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	Unannotated protein; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).	0.989
astD_1	astC	GCA_000283715_01532	GCA_000283715_01530	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	Unannotated protein; Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase. Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.	0.982
astD_1	astD_2	GCA_000283715_01532	GCA_000283715_01533	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	Unannotated protein.	0.993
astD_1	astE	GCA_000283715_01532	GCA_000283715_01535	Unannotated protein; Belongs to the aldehyde dehydrogenase family.	Unannotated protein; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.	0.990