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| | holD | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. (137 aa) |
| | BZ172_02585 | Unannotated protein. (265 aa) |
| | rpsT | Unannotated protein; Binds directly to 16S ribosomal RNA. (87 aa) |
| | polB | Unannotated protein. (783 aa) |
| | rpsB | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. (241 aa) |
| | BZ172_19440 | Unannotated protein. (251 aa) |
| | GCA_000283715_00318 | Unannotated protein. (195 aa) |
| | priC | Unannotated protein. (175 aa) |
| | ybaB | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (109 aa) |
| | recR | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa) |
| | GCA_000283715_00674 | Unannotated protein. (251 aa) |
| | GCA_000283715_00723 | Unannotated protein. (265 aa) |
| | dnaC_3 | Unannotated protein. (248 aa) |
| | ybjQ | Unannotated protein; Belongs to the UPF0145 family. (107 aa) |
| | clpS | Unannotated protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (106 aa) |
| | rarA | Unannotated protein. (447 aa) |
| | rpsA | Unannotated protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (557 aa) |
| | ihfB | Unannotated protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (94 aa) |
| | GCA_000283715_01097 | Unannotated protein. (265 aa) |
| | GCA_000283715_01111 | Unannotated protein. (251 aa) |
| | rpmF | Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family. (57 aa) |
| | ycfD | Unannotated protein. (373 aa) |
| | GCA_000283715_01259 | Unannotated protein. (251 aa) |
| | GCA_000283715_01317 | Unannotated protein. (265 aa) |
| | holE | Unannotated protein. (76 aa) |
| | GCA_000283715_01456 | Unannotated protein. (265 aa) |
| | topB | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (653 aa) |
| | rpmI | Unannotated protein; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | rplT | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (118 aa) |
| | BZ172_25045 | Unannotated protein. (192 aa) |
| | GCA_000283715_01740 | Unannotated protein. (260 aa) |
| | dnaC_2 | Unannotated protein. (248 aa) |
| | BZ172_25705 | Unannotated protein. (354 aa) |
| | BZ172_25170 | Unannotated protein. (265 aa) |
| | rpsV | Unannotated protein. (45 aa) |
| | GCA_000283715_01883 | Unannotated protein. (251 aa) |
| | ydcK | Unannotated protein. (326 aa) |
| | BZ172_25330 | Unannotated protein. (248 aa) |
| | topA | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (865 aa) |
| | GCA_000283715_02168 | Unannotated protein. (184 aa) |
| | yedK | Unannotated protein; Belongs to the SOS response-associated peptidase family. (223 aa) |
| | pduA_1 | Unannotated protein. (94 aa) |
| | pduB | Unannotated protein. (233 aa) |
| | pduC | Unannotated protein. (554 aa) |
| | pduD | Unannotated protein. (222 aa) |
| | pduE | Unannotated protein. (172 aa) |
| | ddrA | Unannotated protein. (610 aa) |
| | BZ172_00260 | Unannotated protein. (116 aa) |
| | pduA_2 | Unannotated protein. (91 aa) |
| | ccmK2 | Unannotated protein. (140 aa) |
| | pduL | Unannotated protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (210 aa) |
| | BZ172_00280 | Unannotated protein. (163 aa) |
| | ccmL | Unannotated protein. (91 aa) |
| | yvqK | Unannotated protein; Belongs to the Cob(I)alamin adenosyltransferase family. (335 aa) |
| | GCA_000283715_02358 | Unannotated protein. (394 aa) |
| | adhE_2 | Unannotated protein. (370 aa) |
| | ccmK1 | Unannotated protein. (184 aa) |
| | pduU | Unannotated protein. (116 aa) |
| | BZ172_00320 | Unannotated protein; Belongs to the EutP/PduV family. (147 aa) |
| | BZ172_00715 | Unannotated protein. (334 aa) |
| | rplY | Unannotated protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. (94 aa) |
| | BZ172_01310 | Unannotated protein. (265 aa) |
| | gyrA | Unannotated protein; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (875 aa) |
| | GCA_000283715_02762 | Unannotated protein. (265 aa) |
| | eutK | Unannotated protein. (166 aa) |
| | BZ172_03060 | Unannotated protein. (219 aa) |
| | eutC | Unannotated protein; Belongs to the EutC family. (295 aa) |
| | GCA_000283715_02853 | Unannotated protein. (453 aa) |
| | eutA | Unannotated protein. (467 aa) |
| | eutG | Unannotated protein. (395 aa) |
| | eutE | Unannotated protein. (467 aa) |
| | eutN | Unannotated protein. (95 aa) |
| | BZ172_03105 | Unannotated protein. (111 aa) |
| | eutT | Unannotated protein. (267 aa) |
| | eutQ | Unannotated protein. (233 aa) |
| | eutP | Unannotated protein; Belongs to the EutP/PduV family. (159 aa) |
| | eutS | Unannotated protein. (111 aa) |
| | hda | Unannotated protein; Mediates the interaction of DNA replication inititator protein DnaA with DNA polymerase subunit beta sliding clamp (dnaN). Stimulates hydrolysis of ATP-DnaA to ADP-DnaA, rendering DnaA inactive for reinititation, a process called regulatory inhibition of DnaA or RIDA; Belongs to the DnaA family. HdA subfamily. (248 aa) |
| | GCA_000283715_03055 | Unannotated protein. (251 aa) |
| | GCA_000283715_03074 | Unannotated protein. (265 aa) |
| | recO | Unannotated protein; Involved in DNA repair and RecF pathway recombination. Belongs to the RecO family. (242 aa) |
| | recN | Unannotated protein; May be involved in recombinational repair of damaged DNA. (553 aa) |
| | rpsP | Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family. (82 aa) |
| | rimM | Unannotated protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (182 aa) |
| | rplS | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (115 aa) |
| | GCA_000283715_03160 | Unannotated protein. (265 aa) |
| | raiA | Unannotated protein. (113 aa) |
| | dnaB_2 | Unannotated protein. (463 aa) |
| | parC | Unannotated protein; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (752 aa) |
| | parE | Unannotated protein; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (630 aa) |
| | rpsU | Unannotated protein; Belongs to the bacterial ribosomal protein bS21 family. (71 aa) |
| | dnaG | Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (581 aa) |
| | diaA | Unannotated protein; Required for the timely initiation of chromosomal replication via direct interactions with the DnaA initiator protein. Belongs to the SIS family. DiaA subfamily. (196 aa) |
| | rpsO | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | GCA_000283715_03745 | Unannotated protein. (265 aa) |
| | rpmA | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. (85 aa) |
| | rplU | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | yfiA | Unannotated protein. (95 aa) |
| | sspB | Unannotated protein. (165 aa) |
| | rpsI | Unannotated protein; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | rplM | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa) |
| | fis | Unannotated protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. (98 aa) |
| | yrdD | Unannotated protein. (180 aa) |
| | rplQ | Unannotated protein. (127 aa) |
| | rpsD | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (206 aa) |
| | rpsK | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rpsM | Unannotated protein; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (118 aa) |
| | rpmJ | Unannotated protein; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | rplO | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (144 aa) |
| | rpmD | Unannotated protein. (59 aa) |
| | rpsE | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (167 aa) |
| | rplR | Unannotated protein; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (117 aa) |
| | rplF | Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa) |
| | rpsH | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa) |
| | rpsN | Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa) |
| | rplE | Unannotated protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa) |
| | rplX | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (104 aa) |
| | rplN | Unannotated protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (123 aa) |
| | rpsQ | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (84 aa) |
| | rpmC | Unannotated protein; Belongs to the universal ribosomal protein uL29 family. (63 aa) |
| | rplP | Unannotated protein; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (136 aa) |
| | rpsC | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (233 aa) |
| | rplV | Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (110 aa) |
| | rpsS | Unannotated protein; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplB | Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (273 aa) |
| | rplW | Unannotated protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (100 aa) |
| | rplD | Unannotated protein; Forms part of the polypeptide exit tunnel. (201 aa) |
| | rplC | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (209 aa) |
| | rpsJ | Unannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa) |
| | GCA_000283715_03896 | Unannotated protein. (265 aa) |
| | rpsG | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsL | Unannotated protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (124 aa) |
| | GCA_000283715_04014 | Unannotated protein. (604 aa) |
| | GCA_000283715_04080 | Unannotated protein. (265 aa) |
| | rpmH | Unannotated protein; Belongs to the bacterial ribosomal protein bL34 family. (46 aa) |
| | gyrB | Unannotated protein; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (804 aa) |
| | GCA_000283715_04195 | Unannotated protein. (265 aa) |
| | ttk | Unannotated protein; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions. (198 aa) |
| | rpmB | Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | rpmG | Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family. (55 aa) |
| | BZ172_10895 | Unannotated protein. (224 aa) |
| | GCA_000283715_04399 | Unannotated protein. (265 aa) |
| | BZ172_12150 | Unannotated protein. (611 aa) |
| | priA | Unannotated protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (732 aa) |
| | rpmE | Unannotated protein; Binds the 23S rRNA. (70 aa) |
| | GCA_000283715_04633 | Unannotated protein. (265 aa) |
| | rplK | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa) |
| | rplA | Unannotated protein; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (234 aa) |
| | rplJ | Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (165 aa) |
| | rplL | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (121 aa) |
| | dnaB_1 | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (471 aa) |
| | BZ172_14180 | Unannotated protein. (191 aa) |
| | rpsF | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. (131 aa) |
| | priB | Unannotated protein; Binds single-stranded DNA at the primosome assembly site (PAS). During primosome assembly it facilitates the complex formation between PriA and DnaT; Belongs to the PriB family. (104 aa) |
| | rpsR | Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (75 aa) |
| | rplI | Unannotated protein; Binds to the 23S rRNA. (149 aa) |
| | GCA_000283715_04996 | Unannotated protein. (265 aa) |
| | BZ172_14905 | Unannotated protein. (160 aa) |
| | dnaC_1 | Unannotated protein. (245 aa) |
| | dnaT | Unannotated protein; This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with DnaB protein and other prepriming proteins DnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'. (179 aa) |
| | BZ172_29700 | Unannotated protein; Belongs to the ParB family. (326 aa) |
| | GCA_000283715_05159 | Unannotated protein. (265 aa) |
| | virB | Unannotated protein; Transcription activator for the invasion antigens IpaB, IpaC and IpaD. VirB is itself regulated by VirF. (309 aa) |
| | GCA_000283715_05253 | Unannotated protein. (251 aa) |
| | GCA_000283715_05265 | Unannotated protein. (265 aa) |
| | BZ172_30460 | Unannotated protein. (77 aa) |
| | GCA_000283715_05291 | Unannotated protein. (265 aa) |
