(4 nodes) Specific amino acids and opine-binding periplasmic protein, ABC transporter network (Shigella sonnei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	argT	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family. (260 aa)
	hisJ	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family. (260 aa)
	artJ	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family. (243 aa)
	artI	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family. (243 aa)

Your Current Organism:

Shigella sonnei

NCBI taxonomy Id: 216599
Other names: S. sonnei 53G, Shigella sonnei 53G, Shigella sonnei str. 53G

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
argT	hisJ	GCA_000283715_02669	GCA_000283715_02668	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	0.443
artI	artJ	GCA_000283715_00902	GCA_000283715_00899	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	0.993
artJ	artI	GCA_000283715_00899	GCA_000283715_00902	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	0.993
hisJ	argT	GCA_000283715_02668	GCA_000283715_02669	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	0.443