(5 nodes) ABC transporter transmembrane region network (Shigella sonnei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cydD	Unannotated protein. (588 aa)
	mdlA	Unannotated protein. (590 aa)
	mdlB	Unannotated protein. (593 aa)
	cudC	Unannotated protein. (573 aa)
	msbA	Unannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (582 aa)

Your Current Organism:

Shigella sonnei

NCBI taxonomy Id: 216599
Other names: S. sonnei 53G, Shigella sonnei 53G, Shigella sonnei str. 53G

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cudC	cydD	GCA_000283715_00927	GCA_000283715_00928	Unannotated protein.	Unannotated protein.	0.998
cudC	mdlB	GCA_000283715_00927	GCA_000283715_00451	Unannotated protein.	Unannotated protein.	0.416
cudC	msbA	GCA_000283715_00927	GCA_000283715_00962	Unannotated protein.	Unannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.415
cydD	cudC	GCA_000283715_00928	GCA_000283715_00927	Unannotated protein.	Unannotated protein.	0.998
cydD	mdlB	GCA_000283715_00928	GCA_000283715_00451	Unannotated protein.	Unannotated protein.	0.409
cydD	msbA	GCA_000283715_00928	GCA_000283715_00962	Unannotated protein.	Unannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.422
mdlA	mdlB	GCA_000283715_00450	GCA_000283715_00451	Unannotated protein.	Unannotated protein.	0.973
mdlB	cudC	GCA_000283715_00451	GCA_000283715_00927	Unannotated protein.	Unannotated protein.	0.416
mdlB	cydD	GCA_000283715_00451	GCA_000283715_00928	Unannotated protein.	Unannotated protein.	0.409
mdlB	mdlA	GCA_000283715_00451	GCA_000283715_00450	Unannotated protein.	Unannotated protein.	0.973
mdlB	msbA	GCA_000283715_00451	GCA_000283715_00962	Unannotated protein.	Unannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.489
msbA	cudC	GCA_000283715_00962	GCA_000283715_00927	Unannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	Unannotated protein.	0.415
msbA	cydD	GCA_000283715_00962	GCA_000283715_00928	Unannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	Unannotated protein.	0.422
msbA	mdlB	GCA_000283715_00962	GCA_000283715_00451	Unannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	Unannotated protein.	0.489