STRINGSTRING
BPSY_0152 BPSY_0152 BPSY_0153 BPSY_0153 BPSY_0631 BPSY_0631 BPSY_0656 BPSY_0656 BPSY_0657 BPSY_0657 BPSY_0827 BPSY_0827 BPSY_0828 BPSY_0828 asd asd BPSY_0862 BPSY_0862 metAA metAA lysA lysA BPSY_0916 BPSY_0916 thrB thrB BPSY_0922 BPSY_0922 BPSY_0973 BPSY_0973 mscL mscL BPSY_0990 BPSY_0990 hisC hisC BPSY_1001 BPSY_1001 serC serC dapD dapD BPSY_1207 BPSY_1207 BPSY_1208 BPSY_1208 luxS luxS BPSY_1273 BPSY_1273 metK metK BPSY_1322 BPSY_1322 BPSY_1353 BPSY_1353 BPSY_1435 BPSY_1435 hisF hisF hisI hisI trpE trpE trpB trpB trpA trpA hisE hisE hisG hisG BPSY_1606 BPSY_1606 BPSY_1629 BPSY_1629 metE metE aroQ aroQ aroK aroK aroC aroC BPSY_1686 BPSY_1686 aroA aroA BPSY_1751 BPSY_1751 BPSY_1761 BPSY_1761 BPSY_1762 BPSY_1762 BPSY_1772 BPSY_1772 trpD trpD BPSY_1873 BPSY_1873 BPSY_1874 BPSY_1874 BPSY_1948 BPSY_1948 hisA hisA hisH hisH hisB hisB hisC-2 hisC-2 hisD hisD dapF dapF BPSY_2041 BPSY_2041 BPSY_2048 BPSY_2048 BPSY_2084 BPSY_2084 dapA dapA dapB dapB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BPSY_0152RpiR family transcriptional regulator. (347 aa)
BPSY_0153Aminotransferase. (416 aa)
BPSY_0631Glutamine amidotransferase class-I. (216 aa)
BPSY_0656O-acetylhomoserine aminocarboxypropyltransferase. (439 aa)
BPSY_0657CoA-binding domain-containing protein. (193 aa)
BPSY_0827Aspartate kinase; Belongs to the aspartokinase family. (254 aa)
BPSY_0828Aspartate kinase. (190 aa)
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (356 aa)
BPSY_0862Chorismate mutase TyrA. (143 aa)
metAAHomoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. (352 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (521 aa)
BPSY_0916Homoserine dehydrogenase. (437 aa)
thrBHomoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. (366 aa)
BPSY_0922Succinyl-diaminopimelate desuccinylase. (413 aa)
BPSY_0973MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (243 aa)
mscLLarge-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. (167 aa)
BPSY_0990Cystathionine gamma lyase. (408 aa)
hisCHistidinol-phosphate transaminase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (365 aa)
BPSY_1001N-succinyldiaminopimelate aminotransferase. (381 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (397 aa)
dapD2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. (324 aa)
BPSY_1207Cystathionine beta-synthase. (337 aa)
BPSY_1208Cystathionine gamma-synthase. (391 aa)
luxSLuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. (162 aa)
BPSY_1273Class I and II aminotransferase. (437 aa)
metKS-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (402 aa)
BPSY_1322Phosphoserine phosphatase. (213 aa)
BPSY_1353Methyltransferase. (289 aa)
BPSY_1435Threonine synthase. (499 aa)
hisFImidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (256 aa)
hisIphosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP. (137 aa)
trpEAnthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] (521 aa)
trpBBifunctional tryptophan synthase subunit beta/indole-3-glycerol phosphate synthase; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine; Belongs to the TrpC family. (698 aa)
trpATryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. (300 aa)
hisEphosphoribosyl-ATP pyrophosphatase. (87 aa)
hisGATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily. (283 aa)
BPSY_1606Shikimate 5-dehydrogenase. (309 aa)
BPSY_16295,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. (236 aa)
metE5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. (770 aa)
aroQ3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. (151 aa)
aroKBifunctional shikimate kinase/3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. (548 aa)
aroCChorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (397 aa)
BPSY_1686Histidinol-phosphate phosphatase. (281 aa)
aroA3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. (450 aa)
BPSY_1751Aminotransferase. (419 aa)
BPSY_1761Class IV superfamily aminotransferase. (317 aa)
BPSY_1762O-acetylhomoserine (thiol)-lyase. (436 aa)
BPSY_1772Aspartate aminotransferase. (392 aa)
trpDAnthranilate phosphoribosyltransferase 1; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). (353 aa)
BPSY_1873Prephenate dehydrogenase. (367 aa)
BPSY_1874Prephenate dehydratase. (341 aa)
BPSY_1948D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (398 aa)
hisAPhosphoribosyl isomerase A. (241 aa)
hisHImidazole glycerol phosphate synthase subunit HisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (217 aa)
hisBImidazoleglycerol-phosphate dehydratase; Histidine biosynthesis bifunctional protein HisB (histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase). (199 aa)
hisC-2Histidinol-phosphate transaminase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (385 aa)
hisDHistidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. (460 aa)
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (315 aa)
BPSY_2041Cystathionine beta-lyase. (395 aa)
BPSY_2048Putative O-acetylhomoserine aminocarboxypropyltransferase. (435 aa)
BPSY_2084Putative O-acetylhomoserine aminocarboxypropyltransferase. (436 aa)
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (296 aa)
dapBDihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (248 aa)
Your Current Organism:
Bifidobacterium psychraerophilum
NCBI taxonomy Id: 218140
Other names: B. psychraerophilum, Bifidobacterium psychraerophilum Simpson et al. 2004, JCM 15958, LMG 21775, LMG:21775, NCIMB 13940, strain T16
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