STRINGSTRING
BPSY_1772 BPSY_1772 BPSY_0249 BPSY_0249 BPSY_0266 BPSY_0266 rsmA rsmA BPSY_0656 BPSY_0656 BPSY_0657 BPSY_0657 mtnA mtnA BPSY_0827 BPSY_0827 BPSY_0828 BPSY_0828 asd asd metAA metAA BPSY_0916 BPSY_0916 BPSY_0928 BPSY_0928 BPSY_0973 BPSY_0973 BPSY_0990 BPSY_0990 BPSY_1006 BPSY_1006 serC serC BPSY_1207 BPSY_1207 BPSY_1208 BPSY_1208 luxS luxS BPSY_1273 BPSY_1273 BPSY_1290 BPSY_1290 metK metK BPSY_1425 BPSY_1425 BPSY_1556 BPSY_1556 metE metE BPSY_1647 BPSY_1647 BPSY_1751 BPSY_1751 BPSY_1762 BPSY_1762 BPSY_1879 BPSY_1879 BPSY_1889 BPSY_1889 BPSY_1948 BPSY_1948 ldh ldh BPSY_2041 BPSY_2041 BPSY_2048 BPSY_2048 BPSY_2060 BPSY_2060 BPSY_2084 BPSY_2084
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BPSY_1772Aspartate aminotransferase. (392 aa)
BPSY_0249Type II N6-adenine DNA methyltransferase recognizing CTGCAG; Belongs to the methyltransferase superfamily. (466 aa)
BPSY_0266Transcriptional regulator, HipB-like protein. (138 aa)
rsmArRNA dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (291 aa)
BPSY_0656O-acetylhomoserine aminocarboxypropyltransferase. (439 aa)
BPSY_0657CoA-binding domain-containing protein. (193 aa)
mtnAPhosphotransferase enzyme and methylthioribose-1-phosphate isomerase, fused; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). (783 aa)
BPSY_0827Aspartate kinase; Belongs to the aspartokinase family. (254 aa)
BPSY_0828Aspartate kinase. (190 aa)
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (356 aa)
metAAHomoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. (352 aa)
BPSY_0916Homoserine dehydrogenase. (437 aa)
BPSY_0928Aspartate aminotransferase. (406 aa)
BPSY_0973MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (243 aa)
BPSY_0990Cystathionine gamma lyase. (408 aa)
BPSY_1006Putative 2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (341 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (397 aa)
BPSY_1207Cystathionine beta-synthase. (337 aa)
BPSY_1208Cystathionine gamma-synthase. (391 aa)
luxSLuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. (162 aa)
BPSY_1273Class I and II aminotransferase. (437 aa)
BPSY_1290L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (359 aa)
metKS-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (402 aa)
BPSY_1425Restriction-modification system, putative endonuclease. (549 aa)
BPSY_1556Methionine synthase II. (455 aa)
metE5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. (770 aa)
BPSY_1647Branched-chain-amino-acid transaminase. (375 aa)
BPSY_1751Aminotransferase. (419 aa)
BPSY_1762O-acetylhomoserine (thiol)-lyase. (436 aa)
BPSY_1879Transcriptional regulator; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (227 aa)
BPSY_1889Spermine synthase. (564 aa)
BPSY_1948D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (398 aa)
ldhL-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (320 aa)
BPSY_2041Cystathionine beta-lyase. (395 aa)
BPSY_2048Putative O-acetylhomoserine aminocarboxypropyltransferase. (435 aa)
BPSY_2060Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily. (412 aa)
BPSY_2084Putative O-acetylhomoserine aminocarboxypropyltransferase. (436 aa)
Your Current Organism:
Bifidobacterium psychraerophilum
NCBI taxonomy Id: 218140
Other names: B. psychraerophilum, Bifidobacterium psychraerophilum Simpson et al. 2004, JCM 15958, LMG 21775, LMG:21775, NCIMB 13940, strain T16
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