(54 nodes) Transporter complex, and ABC transporters network (Streptococcus uberis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SUB0110	MarR-family regulatory protein. (147 aa)
	SUB0111	ABC transporter ATP-binding protein. (233 aa)
	SUB0112	ABC transporter permease protein. (271 aa)
	glnQ2	Putative glutamine ABC transporter, ATP-binding protein 2; Similar to SUB1278, 59.592% identity (59.836% ungapped) in 245 aa overlap (1-245:1-244); and SUB1153, 54.694% identity (54.918% ungapped) in 245 aa overlap (1-245:1-244); and SUB1414, 50.607% identity (52.301% ungapped) in 247 aa overlap (5-246:1-244). (246 aa)
	SUB0337	Glutamine ABC transporter, glutamine-binding protein/permease protein. (516 aa)
	SUB0362	Putative regulatory protein; HMMPfam hit to PF07739, TipAS antibiotic-recognition domain, score 4.9e-49. (120 aa)
	SUB0364	Conserved hypothetical protein. (238 aa)
	SUB0365	Extracellular solute-binding protein. (274 aa)
	SUB0366	Putative lipoprotein; Belongs to the nlpA lipoprotein family. (281 aa)
	SUB0367	Putative peptidase. (457 aa)
	metN	Putative D-methionine transport ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (354 aa)
	SUB0369	Putative D-methionine transport system permease protein. (230 aa)
	scaR	Metal-dependent transcriptional regulator. (215 aa)
	mtuA	Previously sequenced as Streptococcus uberis extracellular manganese-binding protein MtuA UniProt:Q70UQ6 (EMBL:SUB539135) (310 aa) fasta scores: E()=1.1e-111, 100.000% id in 310 aa; Belongs to the bacterial solute-binding protein 9 family. (310 aa)
	mtsB	Metal cation ABC transporter ATP-binding protein. (240 aa)
	mtsC	Metal cation ABC transporter membrane protein. (279 aa)
	SUB0548	Putative amino acid ABC transporter, permease protein. (215 aa)
	SUB0549	Putative amino acid ABC transporter, permease protein. (233 aa)
	SUB0550	Putative glutamine-binding protein precursor. (271 aa)
	glnQ4	Putative glutamine transporter, ATP-binding protein 4; Similar to SUB1278, 53.719% identity (54.167% ungapped) in 242 aa overlap (3-244:5-244); and SUB1153, 51.653% identity (52.083% ungapped) in 242 aa overlap (4-245:6-245). (259 aa)
	SUB0586	Putative extracellular oligopeptide-binding protein; Similar to SUB1625, 69.853% identity (69.982% ungapped) in 544 aa overlap (4-547:9-551). (549 aa)
	adcA	Zinc-binding protein AdcA precursor; Belongs to the bacterial solute-binding protein 9 family. (518 aa)
	SUB0638	Putative extracellular amino acid-binding protein; Similar to SUB0688, 59.245% identity (59.470% ungapped) in 265 aa overlap (1-264:1-265). (268 aa)
	SUB0688	Extracellular solute-binding protein; Similar to SUB0638, 59.245% identity (59.470% ungapped) in 265 aa overlap (1-265:1-264). (270 aa)
	SUB0858	Conserved hypothetical protein. (229 aa)
	SUB0860	Zinc-binding dehydrogenase. (319 aa)
	SUB0861	MarR family regulatory protein. (146 aa)
	SUB0862	ABC-type glycine betaine transport system ATP-binding protein. (242 aa)
	SUB0863	ABC-type glycine betaine transport system protein. (508 aa)
	lmb	Laminin binding protein; Belongs to the bacterial solute-binding protein 9 family. (309 aa)
	SUB0978	GntR family regulatory protein. (214 aa)
	SUB0990	Putative amino acid ABC transporter, extracellular amino acid-binding protein. (277 aa)
	SUB0991	Putative amino acid ABC transporter ATP-binding protein. (209 aa)
	SUB0992	Putative amino acid ABC transporter permease protein. (213 aa)
	SUB1018	Transport system membrane protein. (219 aa)
	SUB1019	Extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family. (282 aa)
	SUB1152	Putative glutamine ABC transporter, glutamine-binding protein/permease protein. (724 aa)
	glnQ1	Putative glutamine ABC transporter, ATP-binding protein 1; Similar to SUB1278, 61.066% identity (61.066% ungapped) in 244 aa overlap (1-244:1-244); and SUB0336, 54.694% identity (54.918% ungapped) in 245 aa overlap (1-244:1-245); and SUB0551, 51.653% identity (52.083% ungapped) in 242 aa overlap (6-245:4-245). (246 aa)
	glnQ3	Putative glutamine transporter, ATP-binding protein 3; Similar to SUB1153, 61.066% identity (61.066% ungapped) in 244 aa overlap (1-244:1-244); and SUB0336, 59.592% identity (59.836% ungapped) in 245 aa overlap (1-244:1-245); and SUB0551, 53.719% identity (54.167% ungapped) in 242 aa overlap (5-244:3-244); and SUB1414, 50.207% identity (50.840% ungapped) in 241 aa overlap (5-242:1-241). (244 aa)
	SUB1279	Putative amino acid ABC transporter permease protein. (229 aa)
	SUB1414	ABC transporter ATP-binding protein; Similar to SUB1278, 50.207% identity (50.840% ungapped) in 241 aa overlap (1-241:5-242); and SUB0336, 50.607% identity (52.301% ungapped) in 247 aa overlap (1-244:5-246). (247 aa)
	SUB1415	ABC transporter permease protein. (274 aa)
	dppF	Di-tripeptide transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (311 aa)
	dppD	Di-tripeptide transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (348 aa)
	dppC	Di-tripeptide transporter permease protein. (343 aa)
	dppB	Di-tripeptide transport system permease protein. (304 aa)
	dppA	Putative peptide binding protein; Q93QH8_9LACT; Similar to SUB0586, 69.853% identity (69.982% ungapped) in 544 aa overlap (9-551:4-547). (552 aa)
	glnR	MerR family regulatory protein. (123 aa)
	SUB1628	Putative membrane protein. (169 aa)
	SUB1714	Ferric uptake regulator family protein; Belongs to the Fur family. (156 aa)
	SUB1715	Putative CoA binding protein. (144 aa)
	SUB1717	Putative glycine-betaine binding permease protein. (575 aa)
	SUB1718	Putative glycine betaine transport ATP-binding protein. (425 aa)
	SUB1719	Conserved hypothetical protein. (294 aa)

Your Current Organism:

Streptococcus uberis

NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SUB0110	SUB0111	SUB0110	SUB0111	MarR-family regulatory protein.	ABC transporter ATP-binding protein.	0.959
SUB0110	SUB0112	SUB0110	SUB0112	MarR-family regulatory protein.	ABC transporter permease protein.	0.961
SUB0110	SUB0863	SUB0110	SUB0863	MarR-family regulatory protein.	ABC-type glycine betaine transport system protein.	0.480
SUB0110	adcA	SUB0110	SUB0634	MarR-family regulatory protein.	Zinc-binding protein AdcA precursor; Belongs to the bacterial solute-binding protein 9 family.	0.843
SUB0110	lmb	SUB0110	SUB0884	MarR-family regulatory protein.	Laminin binding protein; Belongs to the bacterial solute-binding protein 9 family.	0.702
SUB0111	SUB0110	SUB0111	SUB0110	ABC transporter ATP-binding protein.	MarR-family regulatory protein.	0.959
SUB0111	SUB0112	SUB0111	SUB0112	ABC transporter ATP-binding protein.	ABC transporter permease protein.	0.998
SUB0111	SUB1714	SUB0111	SUB1714	ABC transporter ATP-binding protein.	Ferric uptake regulator family protein; Belongs to the Fur family.	0.419
SUB0111	adcA	SUB0111	SUB0634	ABC transporter ATP-binding protein.	Zinc-binding protein AdcA precursor; Belongs to the bacterial solute-binding protein 9 family.	0.996
SUB0111	lmb	SUB0111	SUB0884	ABC transporter ATP-binding protein.	Laminin binding protein; Belongs to the bacterial solute-binding protein 9 family.	0.989
SUB0111	mtsC	SUB0111	SUB0475	ABC transporter ATP-binding protein.	Metal cation ABC transporter membrane protein.	0.903
SUB0111	mtuA	SUB0111	SUB0473	ABC transporter ATP-binding protein.	Previously sequenced as Streptococcus uberis extracellular manganese-binding protein MtuA UniProt:Q70UQ6 (EMBL:SUB539135) (310 aa) fasta scores: E()=1.1e-111, 100.000% id in 310 aa; Belongs to the bacterial solute-binding protein 9 family.	0.814
SUB0112	SUB0110	SUB0112	SUB0110	ABC transporter permease protein.	MarR-family regulatory protein.	0.961
SUB0112	SUB0111	SUB0112	SUB0111	ABC transporter permease protein.	ABC transporter ATP-binding protein.	0.998
SUB0112	SUB0337	SUB0112	SUB0337	ABC transporter permease protein.	Glutamine ABC transporter, glutamine-binding protein/permease protein.	0.427
SUB0112	SUB0992	SUB0112	SUB0992	ABC transporter permease protein.	Putative amino acid ABC transporter permease protein.	0.499
SUB0112	SUB1018	SUB0112	SUB1018	ABC transporter permease protein.	Transport system membrane protein.	0.472
SUB0112	SUB1152	SUB0112	SUB1152	ABC transporter permease protein.	Putative glutamine ABC transporter, glutamine-binding protein/permease protein.	0.427
SUB0112	SUB1279	SUB0112	SUB1279	ABC transporter permease protein.	Putative amino acid ABC transporter permease protein.	0.493
SUB0112	SUB1415	SUB0112	SUB1415	ABC transporter permease protein.	ABC transporter permease protein.	0.458