(5 nodes) Mixed, incl. RNA polymerase sigma-G type, actinobacteria, and RNA polymerase sigma-70 region 4 network (Amycolatopsis pretoriensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEF25949.1	RNA polymerase sigma-70 factor, ECF subfamily. (212 aa)
	SEF28632.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (209 aa)
	SEF30989.1	Hypothetical protein. (352 aa)
	SEF30991.1	RNA polymerase sigma-70 factor, ECF subfamily. (230 aa)
	SEF32622.1	RNA polymerase sigma-70 factor, ECF subfamily. (300 aa)

Your Current Organism:

Amycolatopsis pretoriensis

NCBI taxonomy Id: 218821
Other names: A. pretoriensis, Amycolatopsis pretoriensis Labeda et al. 2003, DSM 44654, JCM 12673, NRRL B-24133, strain ARC OV1 0181

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEF25949.1	SEF28632.1	SAMN05421837_10315	SAMN05421837_104247	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.610
SEF28632.1	SEF25949.1	SAMN05421837_104247	SAMN05421837_10315	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.610
SEF28632.1	SEF30989.1	SAMN05421837_104247	SAMN05421837_105535	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein.	0.638
SEF28632.1	SEF30991.1	SAMN05421837_104247	SAMN05421837_105536	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.712
SEF28632.1	SEF32622.1	SAMN05421837_104247	SAMN05421837_106351	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.446
SEF30989.1	SEF28632.1	SAMN05421837_105535	SAMN05421837_104247	Hypothetical protein.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.638
SEF30989.1	SEF30991.1	SAMN05421837_105535	SAMN05421837_105536	Hypothetical protein.	RNA polymerase sigma-70 factor, ECF subfamily.	0.994
SEF30991.1	SEF28632.1	SAMN05421837_105536	SAMN05421837_104247	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.712
SEF30991.1	SEF30989.1	SAMN05421837_105536	SAMN05421837_105535	RNA polymerase sigma-70 factor, ECF subfamily.	Hypothetical protein.	0.994
SEF30991.1	SEF32622.1	SAMN05421837_105536	SAMN05421837_106351	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.556
SEF32622.1	SEF28632.1	SAMN05421837_106351	SAMN05421837_104247	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.446
SEF32622.1	SEF30991.1	SAMN05421837_106351	SAMN05421837_105536	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.556