(14 nodes) Mixed, incl. Nucleotide-excision repair complex, and Calcium-binding protein KIC/PBP1/KRP1 network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5C5E7	Uncharacterized protein. (887 aa)
	A0A2G5CL26	EF-hand domain-containing protein. (103 aa)
	A0A2G5CV37	Uncharacterized protein. (633 aa)
	A0A2G5CVL9	Uncharacterized protein. (906 aa)
	A0A2G5DA71	Uncharacterized protein. (605 aa)
	A0A2G5DJM9	Uncharacterized protein. (462 aa)
	A0A2G5DKY9	WD_REPEATS_REGION domain-containing protein. (453 aa)
	A0A2G5DS25	Uncharacterized protein. (395 aa)
	A0A2G5DTA1	HMG box domain-containing protein. (161 aa)
	A0A2G5EEL1	Uncharacterized protein; Belongs to the peptidase C19 family. (1118 aa)
	A0A2G5EF30	Uncharacterized protein. (775 aa)
	A0A2G5EL79	Uncharacterized protein. (169 aa)
	A0A2G5EQH6	EF-hand domain-containing protein. (116 aa)
	A0A2G5F2A6	XPGI domain-containing protein. (1466 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5C5E7	A0A2G5CL26	Uncharacterized protein.	EF-hand domain-containing protein.	0.948
A0A2G5C5E7	A0A2G5CVL9	Uncharacterized protein.	Uncharacterized protein.	0.651
A0A2G5C5E7	A0A2G5DA71	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A2G5C5E7	A0A2G5DJM9	Uncharacterized protein.	Uncharacterized protein.	0.604
A0A2G5C5E7	A0A2G5DKY9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.534
A0A2G5C5E7	A0A2G5DS25	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A2G5C5E7	A0A2G5DTA1	Uncharacterized protein.	HMG box domain-containing protein.	0.541
A0A2G5C5E7	A0A2G5EF30	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A2G5C5E7	A0A2G5EL79	Uncharacterized protein.	Uncharacterized protein.	0.948
A0A2G5C5E7	A0A2G5EQH6	Uncharacterized protein.	EF-hand domain-containing protein.	0.948
A0A2G5C5E7	A0A2G5F2A6	Uncharacterized protein.	XPGI domain-containing protein.	0.870
A0A2G5CL26	A0A2G5C5E7	EF-hand domain-containing protein.	Uncharacterized protein.	0.948
A0A2G5CL26	A0A2G5DA71	EF-hand domain-containing protein.	Uncharacterized protein.	0.567
A0A2G5CL26	A0A2G5DS25	EF-hand domain-containing protein.	Uncharacterized protein.	0.772
A0A2G5CL26	A0A2G5EF30	EF-hand domain-containing protein.	Uncharacterized protein.	0.655
A0A2G5CL26	A0A2G5F2A6	EF-hand domain-containing protein.	XPGI domain-containing protein.	0.611
A0A2G5CV37	A0A2G5CVL9	Uncharacterized protein.	Uncharacterized protein.	0.843
A0A2G5CV37	A0A2G5DA71	Uncharacterized protein.	Uncharacterized protein.	0.847
A0A2G5CV37	A0A2G5DKY9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.962
A0A2G5CV37	A0A2G5DS25	Uncharacterized protein.	Uncharacterized protein.	0.405