(28 nodes) Mixed, incl. Prp19 complex, and G10 protein network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5C1S1	Uncharacterized protein. (660 aa)
	A0A2G5CJM5	Uncharacterized protein. (747 aa)
	A0A2G5CMU1	Uncharacterized protein. (135 aa)
	A0A2G5CQ37	Uncharacterized protein. (358 aa)
	A0A2G5CQR1	Uncharacterized protein. (523 aa)
	A0A2G5CTM0	Uncharacterized protein. (725 aa)
	A0A2G5CY98	Uncharacterized protein. (525 aa)
	A0A2G5CYR2	Uncharacterized protein. (1139 aa)
	A0A2G5D3Q2	Uncharacterized protein. (1560 aa)
	A0A2G5D4J2	WD_REPEATS_REGION domain-containing protein. (277 aa)
	A0A2G5D5I1	Uncharacterized protein. (152 aa)
	A0A2G5D6Q9	Uncharacterized protein. (660 aa)
	A0A2G5D7P7	Uncharacterized protein. (145 aa)
	A0A2G5D8H5	Uncharacterized protein. (260 aa)
	A0A2G5DA76	RRM domain-containing protein. (192 aa)
	A0A2G5DCQ1	TPR_REGION domain-containing protein. (924 aa)
	A0A2G5DGI1	TPR_REGION domain-containing protein. (719 aa)
	A0A2G5DV07	Uncharacterized protein. (295 aa)
	A0A2G5E7C7	SKIP_SNW domain-containing protein. (608 aa)
	A0A2G5EDI6	Uncharacterized protein. (129 aa)
	A0A2G5ENB1	Uncharacterized protein. (156 aa)
	A0A2G5F1S8	Uncharacterized protein. (227 aa)
	A0A2G5F644	Uncharacterized protein. (541 aa)
	A0A2G5F669	Uncharacterized protein. (673 aa)
	A0A2G5F6L5	WD_REPEATS_REGION domain-containing protein. (363 aa)
	A0A2G5F6N7	WD_REPEATS_REGION domain-containing protein. (355 aa)
	A0A2G5F7W5	Uncharacterized protein. (261 aa)
	A0A2G5F851	DUF1716 domain-containing protein. (533 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5C1S1	A0A2G5CJM5	Uncharacterized protein.	Uncharacterized protein.	0.827
A0A2G5C1S1	A0A2G5CMU1	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A2G5C1S1	A0A2G5CQ37	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A2G5C1S1	A0A2G5CTM0	Uncharacterized protein.	Uncharacterized protein.	0.817
A0A2G5C1S1	A0A2G5CY98	Uncharacterized protein.	Uncharacterized protein.	0.873
A0A2G5C1S1	A0A2G5CYR2	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A2G5C1S1	A0A2G5D3Q2	Uncharacterized protein.	Uncharacterized protein.	0.941
A0A2G5C1S1	A0A2G5D4J2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.832
A0A2G5C1S1	A0A2G5D5I1	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A2G5C1S1	A0A2G5D8H5	Uncharacterized protein.	Uncharacterized protein.	0.848
A0A2G5C1S1	A0A2G5DA76	Uncharacterized protein.	RRM domain-containing protein.	0.938
A0A2G5C1S1	A0A2G5DCQ1	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.908
A0A2G5C1S1	A0A2G5DGI1	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.908
A0A2G5C1S1	A0A2G5DV07	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A2G5C1S1	A0A2G5E7C7	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.961
A0A2G5C1S1	A0A2G5EDI6	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A2G5C1S1	A0A2G5ENB1	Uncharacterized protein.	Uncharacterized protein.	0.864
A0A2G5C1S1	A0A2G5F1S8	Uncharacterized protein.	Uncharacterized protein.	0.864
A0A2G5C1S1	A0A2G5F644	Uncharacterized protein.	Uncharacterized protein.	0.817
A0A2G5C1S1	A0A2G5F669	Uncharacterized protein.	Uncharacterized protein.	0.817