(10 nodes) Mixed, incl. U2-type catalytic step 2 spliceosome, and G10 protein network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5CQ37	Uncharacterized protein. (358 aa)
	A0A2G5D3Q2	Uncharacterized protein. (1560 aa)
	A0A2G5D5I1	Uncharacterized protein. (152 aa)
	A0A2G5D7P7	Uncharacterized protein. (145 aa)
	A0A2G5DA76	RRM domain-containing protein. (192 aa)
	A0A2G5DCQ1	TPR_REGION domain-containing protein. (924 aa)
	A0A2G5DV07	Uncharacterized protein. (295 aa)
	A0A2G5E7C7	SKIP_SNW domain-containing protein. (608 aa)
	A0A2G5F644	Uncharacterized protein. (541 aa)
	A0A2G5F7W5	Uncharacterized protein. (261 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5CQ37	A0A2G5D3Q2	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A2G5CQ37	A0A2G5D5I1	Uncharacterized protein.	Uncharacterized protein.	0.698
A0A2G5CQ37	A0A2G5D7P7	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A2G5CQ37	A0A2G5DA76	Uncharacterized protein.	RRM domain-containing protein.	0.997
A0A2G5CQ37	A0A2G5DCQ1	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.829
A0A2G5CQ37	A0A2G5DV07	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A2G5CQ37	A0A2G5E7C7	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.996
A0A2G5CQ37	A0A2G5F644	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A2G5CQ37	A0A2G5F7W5	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A2G5D3Q2	A0A2G5CQ37	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A2G5D3Q2	A0A2G5D5I1	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A2G5D3Q2	A0A2G5D7P7	Uncharacterized protein.	Uncharacterized protein.	0.941
A0A2G5D3Q2	A0A2G5DA76	Uncharacterized protein.	RRM domain-containing protein.	0.998
A0A2G5D3Q2	A0A2G5DCQ1	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.981
A0A2G5D3Q2	A0A2G5DV07	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2G5D3Q2	A0A2G5E7C7	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.998
A0A2G5D3Q2	A0A2G5F644	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A2G5D3Q2	A0A2G5F7W5	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A2G5D5I1	A0A2G5CQ37	Uncharacterized protein.	Uncharacterized protein.	0.698
A0A2G5D5I1	A0A2G5D3Q2	Uncharacterized protein.	Uncharacterized protein.	0.946