(19 nodes) Mixed, incl. Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, and HDACs deacetylate histones network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5C0G5	Uncharacterized protein. (76 aa)
	A0A2G5C241	Uncharacterized protein. (332 aa)
	A0A2G5CHA1	Uncharacterized protein. (416 aa)
	A0A2G5CIA2	Uncharacterized protein. (166 aa)
	A0A2G5CJL1	RRM domain-containing protein. (245 aa)
	A0A2G5CMM8	Helicase ATP-binding domain-containing protein. (1281 aa)
	A0A2G5CNE3	Uncharacterized protein. (153 aa)
	A0A2G5CWE8	Uncharacterized protein. (151 aa)
	A0A2G5CWX6	Uncharacterized protein. (157 aa)
	A0A2G5D2S3	Uncharacterized protein. (419 aa)
	A0A2G5D9A7	RRM domain-containing protein. (153 aa)
	A0A2G5DBX0	Pinin_SDK_memA domain-containing protein. (441 aa)
	A0A2G5DL13	Smg4_UPF3 domain-containing protein. (551 aa)
	A0A2G5DSW8	Uncharacterized protein. (1193 aa)
	A0A2G5DUX1	Mago-bind domain-containing protein. (226 aa)
	A0A2G5DWZ4	SAP domain-containing protein. (772 aa)
	A0A2G5DYK9	RRM domain-containing protein. (198 aa)
	A0A2G5E8H1	RRM domain-containing protein. (109 aa)
	A0A2G5E8H9	Uncharacterized protein. (91 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5C0G5	A0A2G5C241	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A2G5C0G5	A0A2G5CHA1	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A2G5C0G5	A0A2G5CIA2	Uncharacterized protein.	Uncharacterized protein.	0.694
A0A2G5C0G5	A0A2G5CJL1	Uncharacterized protein.	RRM domain-containing protein.	0.694
A0A2G5C0G5	A0A2G5CMM8	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.731
A0A2G5C0G5	A0A2G5CNE3	Uncharacterized protein.	Uncharacterized protein.	0.933
A0A2G5C0G5	A0A2G5CWX6	Uncharacterized protein.	Uncharacterized protein.	0.881
A0A2G5C0G5	A0A2G5D2S3	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A2G5C0G5	A0A2G5D9A7	Uncharacterized protein.	RRM domain-containing protein.	0.694
A0A2G5C0G5	A0A2G5DBX0	Uncharacterized protein.	Pinin_SDK_memA domain-containing protein.	0.903
A0A2G5C0G5	A0A2G5DL13	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.985
A0A2G5C0G5	A0A2G5DSW8	Uncharacterized protein.	Uncharacterized protein.	0.837
A0A2G5C0G5	A0A2G5DUX1	Uncharacterized protein.	Mago-bind domain-containing protein.	0.955
A0A2G5C0G5	A0A2G5DWZ4	Uncharacterized protein.	SAP domain-containing protein.	0.940
A0A2G5C0G5	A0A2G5DYK9	Uncharacterized protein.	RRM domain-containing protein.	0.995
A0A2G5C0G5	A0A2G5E8H1	Uncharacterized protein.	RRM domain-containing protein.	0.694
A0A2G5C0G5	A0A2G5E8H9	Uncharacterized protein.	Uncharacterized protein.	0.694
A0A2G5C241	A0A2G5C0G5	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A2G5C241	A0A2G5CIA2	Uncharacterized protein.	Uncharacterized protein.	0.735
A0A2G5C241	A0A2G5CJL1	Uncharacterized protein.	RRM domain-containing protein.	0.735