(10 nodes) Mixed, incl. Exon-exon junction complex, and RNA helicase (UPF2 interacting domain) network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5CIA2	Uncharacterized protein. (166 aa)
	A0A2G5CMM8	Helicase ATP-binding domain-containing protein. (1281 aa)
	A0A2G5CNE3	Uncharacterized protein. (153 aa)
	A0A2G5CWE8	Uncharacterized protein. (151 aa)
	A0A2G5D2S3	Uncharacterized protein. (419 aa)
	A0A2G5DL13	Smg4_UPF3 domain-containing protein. (551 aa)
	A0A2G5DSW8	Uncharacterized protein. (1193 aa)
	A0A2G5DUX1	Mago-bind domain-containing protein. (226 aa)
	A0A2G5DYK9	RRM domain-containing protein. (198 aa)
	A0A2G5E8H9	Uncharacterized protein. (91 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5CIA2	A0A2G5CMM8	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.768
A0A2G5CIA2	A0A2G5CNE3	Uncharacterized protein.	Uncharacterized protein.	0.735
A0A2G5CIA2	A0A2G5CWE8	Uncharacterized protein.	Uncharacterized protein.	0.694
A0A2G5CIA2	A0A2G5D2S3	Uncharacterized protein.	Uncharacterized protein.	0.735
A0A2G5CIA2	A0A2G5DL13	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.880
A0A2G5CIA2	A0A2G5DSW8	Uncharacterized protein.	Uncharacterized protein.	0.910
A0A2G5CIA2	A0A2G5DYK9	Uncharacterized protein.	RRM domain-containing protein.	0.905
A0A2G5CIA2	A0A2G5E8H9	Uncharacterized protein.	Uncharacterized protein.	0.890
A0A2G5CMM8	A0A2G5CIA2	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.768
A0A2G5CMM8	A0A2G5CNE3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.614
A0A2G5CMM8	A0A2G5CWE8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.731
A0A2G5CMM8	A0A2G5D2S3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.614
A0A2G5CMM8	A0A2G5DL13	Helicase ATP-binding domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.991
A0A2G5CMM8	A0A2G5DSW8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.994
A0A2G5CMM8	A0A2G5DYK9	Helicase ATP-binding domain-containing protein.	RRM domain-containing protein.	0.963
A0A2G5CMM8	A0A2G5E8H9	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.768
A0A2G5CNE3	A0A2G5CIA2	Uncharacterized protein.	Uncharacterized protein.	0.735
A0A2G5CNE3	A0A2G5CMM8	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.614
A0A2G5CNE3	A0A2G5CWE8	Uncharacterized protein.	Uncharacterized protein.	0.933
A0A2G5CNE3	A0A2G5DL13	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.941