(23 nodes) PAZ domain, and RNAi-mediated antiviral immune response network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5C6B7	Uncharacterized protein. (272 aa)
	A0A2G5CIK0	Uncharacterized protein. (947 aa)
	A0A2G5CMK6	Uncharacterized protein. (246 aa)
	A0A2G5CUN1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (2000 aa)
	A0A2G5D2U4	Uncharacterized protein; Belongs to the argonaute family. (985 aa)
	A0A2G5D9T7	Uncharacterized protein. (442 aa)
	A0A2G5DDB0	Uncharacterized protein. (530 aa)
	A0A2G5DEX3	Uncharacterized protein; Belongs to the argonaute family. (920 aa)
	A0A2G5DG13	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1195 aa)
	A0A2G5DHZ1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1601 aa)
	A0A2G5DJ31	Uncharacterized protein; Belongs to the argonaute family. (917 aa)
	A0A2G5DR27	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1387 aa)
	A0A2G5DRY4	Uncharacterized protein. (242 aa)
	A0A2G5DYS1	Uncharacterized protein. (918 aa)
	A0A2G5DYS4	Uncharacterized protein. (905 aa)
	A0A2G5E1S3	Piwi domain-containing protein. (876 aa)
	A0A2G5EEC1	Uncharacterized protein. (693 aa)
	A0A2G5ETC7	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1578 aa)
	A0A2G5EWL5	Uncharacterized protein. (269 aa)
	A0A2G5F4B9	Uncharacterized protein; Belongs to the argonaute family. (952 aa)
	A0A2G5F5L4	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1408 aa)
	A0A2G5F7J2	Uncharacterized protein; Belongs to the argonaute family. (1038 aa)
	A0A2G5F894	DRBM domain-containing protein. (98 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5C6B7	A0A2G5CMK6	Uncharacterized protein.	Uncharacterized protein.	0.588
A0A2G5C6B7	A0A2G5D2U4	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.588
A0A2G5C6B7	A0A2G5DDB0	Uncharacterized protein.	Uncharacterized protein.	0.588
A0A2G5C6B7	A0A2G5DEX3	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.588
A0A2G5C6B7	A0A2G5DJ31	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.588
A0A2G5C6B7	A0A2G5DYS1	Uncharacterized protein.	Uncharacterized protein.	0.588
A0A2G5C6B7	A0A2G5DYS4	Uncharacterized protein.	Uncharacterized protein.	0.588
A0A2G5C6B7	A0A2G5E1S3	Uncharacterized protein.	Piwi domain-containing protein.	0.588
A0A2G5C6B7	A0A2G5EWL5	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A2G5C6B7	A0A2G5F4B9	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.588
A0A2G5C6B7	A0A2G5F7J2	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.588
A0A2G5CIK0	A0A2G5CUN1	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.585
A0A2G5CIK0	A0A2G5DG13	Uncharacterized protein.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.475
A0A2G5CIK0	A0A2G5DHZ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.497
A0A2G5CIK0	A0A2G5DR27	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.527
A0A2G5CIK0	A0A2G5DRY4	Uncharacterized protein.	Uncharacterized protein.	0.519
A0A2G5CIK0	A0A2G5ETC7	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.497
A0A2G5CIK0	A0A2G5F4B9	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.518
A0A2G5CIK0	A0A2G5F5L4	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.556
A0A2G5CIK0	A0A2G5F894	Uncharacterized protein.	DRBM domain-containing protein.	0.512