(24 nodes) pre-mRNA 3-splice site binding network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5E9W4	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (560 aa)
	A0A2G5EYA4	X8 domain-containing protein. (631 aa)
	A0A2G5EIY7	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (586 aa)
	A0A2G5EGU0	Uncharacterized protein. (326 aa)
	A0A2G5E5D6	Uncharacterized protein. (211 aa)
	A0A2G5DU96	Uncharacterized protein. (832 aa)
	A0A2G5DQF8	Uncharacterized protein. (1021 aa)
	A0A2G5DPX9	DUF3700 domain-containing protein. (254 aa)
	A0A2G5DPB2	Slu7 domain-containing protein. (540 aa)
	A0A2G5DLR1	Uncharacterized protein. (277 aa)
	A0A2G5DLP6	Uncharacterized protein. (278 aa)
	A0A2G5DJF9	Uncharacterized protein. (301 aa)
	A0A2G5DIL4	Uncharacterized protein. (311 aa)
	A0A2G5DFX1	Slu7 domain-containing protein. (429 aa)
	A0A2G5DEN1	Uncharacterized protein. (256 aa)
	A0A2G5DD97	X8 domain-containing protein. (260 aa)
	A0A2G5DA99	C3H1-type domain-containing protein. (279 aa)
	A0A2G5D7Z7	Uncharacterized protein. (384 aa)
	A0A2G5CK35	DUF3700 domain-containing protein. (249 aa)
	A0A2G5CGW0	C3H1-type domain-containing protein. (279 aa)
	A0A2G5CFK4	X8 domain-containing protein. (310 aa)
	A0A2G5C631	Uncharacterized protein. (320 aa)
	A0A2G5C1A0	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (558 aa)
	A0A2G5C0C7	Uncharacterized protein. (303 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5C0C7	A0A2G5C1A0	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.760
A0A2G5C0C7	A0A2G5CFK4	Uncharacterized protein.	X8 domain-containing protein.	0.670
A0A2G5C0C7	A0A2G5CK35	Uncharacterized protein.	DUF3700 domain-containing protein.	0.670
A0A2G5C0C7	A0A2G5D7Z7	Uncharacterized protein.	Uncharacterized protein.	0.603
A0A2G5C0C7	A0A2G5DD97	Uncharacterized protein.	X8 domain-containing protein.	0.670
A0A2G5C0C7	A0A2G5DPX9	Uncharacterized protein.	DUF3700 domain-containing protein.	0.670
A0A2G5C0C7	A0A2G5DQF8	Uncharacterized protein.	Uncharacterized protein.	0.603
A0A2G5C0C7	A0A2G5E9W4	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.670
A0A2G5C0C7	A0A2G5EIY7	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.670
A0A2G5C0C7	A0A2G5EYA4	Uncharacterized protein.	X8 domain-containing protein.	0.670
A0A2G5C1A0	A0A2G5C0C7	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Uncharacterized protein.	0.760
A0A2G5C1A0	A0A2G5C631	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Uncharacterized protein.	0.760
A0A2G5C1A0	A0A2G5CGW0	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	C3H1-type domain-containing protein.	0.760
A0A2G5C1A0	A0A2G5D7Z7	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Uncharacterized protein.	0.863
A0A2G5C1A0	A0A2G5DA99	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	C3H1-type domain-containing protein.	0.760
A0A2G5C1A0	A0A2G5DEN1	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Uncharacterized protein.	0.760
A0A2G5C1A0	A0A2G5DFX1	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Slu7 domain-containing protein.	0.611
A0A2G5C1A0	A0A2G5DIL4	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Uncharacterized protein.	0.760
A0A2G5C1A0	A0A2G5DJF9	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Uncharacterized protein.	0.760
A0A2G5C1A0	A0A2G5DLP6	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Uncharacterized protein.	0.760