(18 nodes) Carboxy-terminal domain protein kinase complex network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5CKP0	Uncharacterized protein. (911 aa)
	A0A2G5CMS1	Aa_trans domain-containing protein. (484 aa)
	A0A2G5CPM1	MAT1 domain-containing protein. (196 aa)
	A0A2G5D1X5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (420 aa)
	A0A2G5DM18	CYCLIN domain-containing protein; Belongs to the cyclin family. (334 aa)
	A0A2G5DMV7	Uncharacterized protein; Belongs to the cyclin family. (353 aa)
	A0A2G5DNV2	General transcription factor IIH subunit. (427 aa)
	A0A2G5DQQ7	Uncharacterized protein. (82 aa)
	A0A2G5DTV3	WD_REPEATS_REGION domain-containing protein. (189 aa)
	A0A2G5DWG9	Protein kinase domain-containing protein. (582 aa)
	A0A2G5EAB2	Uncharacterized protein; Belongs to the cyclin family. (623 aa)
	A0A2G5EJ12	Uncharacterized protein; Belongs to the cyclin family. (623 aa)
	A0A2G5EJD4	Uncharacterized protein; Belongs to the cyclin family. (461 aa)
	A0A2G5ENI0	Aa_trans domain-containing protein. (499 aa)
	A0A2G5ET36	C2H2-type domain-containing protein. (418 aa)
	A0A2G5EUB5	Aa_trans domain-containing protein. (479 aa)
	A0A2G5FAE0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (460 aa)
	A0A2G5FAW7	MAT1 domain-containing protein. (196 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5CKP0	A0A2G5D1X5	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.994
A0A2G5CKP0	A0A2G5DM18	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.995
A0A2G5CKP0	A0A2G5DMV7	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.621
A0A2G5CKP0	A0A2G5DNV2	Uncharacterized protein.	General transcription factor IIH subunit.	0.954
A0A2G5CKP0	A0A2G5DWG9	Uncharacterized protein.	Protein kinase domain-containing protein.	0.499
A0A2G5CKP0	A0A2G5EAB2	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.621
A0A2G5CKP0	A0A2G5EJ12	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.621
A0A2G5CKP0	A0A2G5EJD4	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.621
A0A2G5CKP0	A0A2G5ET36	Uncharacterized protein.	C2H2-type domain-containing protein.	0.954
A0A2G5CKP0	A0A2G5FAE0	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.540
A0A2G5CMS1	A0A2G5DQQ7	Aa_trans domain-containing protein.	Uncharacterized protein.	0.702
A0A2G5CMS1	A0A2G5ENI0	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.700
A0A2G5CPM1	A0A2G5D1X5	MAT1 domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.987
A0A2G5CPM1	A0A2G5DM18	MAT1 domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.986
A0A2G5CPM1	A0A2G5DMV7	MAT1 domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.621
A0A2G5CPM1	A0A2G5DNV2	MAT1 domain-containing protein.	General transcription factor IIH subunit.	0.969
A0A2G5CPM1	A0A2G5DWG9	MAT1 domain-containing protein.	Protein kinase domain-containing protein.	0.499
A0A2G5CPM1	A0A2G5EAB2	MAT1 domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.621
A0A2G5CPM1	A0A2G5EJ12	MAT1 domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.621
A0A2G5CPM1	A0A2G5EJD4	MAT1 domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.621